GgaINT0119207 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90779499-90780313:-
Coord C1 exon
chr1:90780143-90780313
Coord A exon
chr1:90779604-90780142
Coord C2 exon
chr1:90779499-90779603
Length
539 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GAGGTTTTTCTTTTTTGCAGGTT
3' ss Score
9.79
Exon sequences
Seq C1 exon
GCAGCAATGATGGCTGAGGAGCTTAAAAAGGAGCAAGATACTAGTGCTCACTTGGAGAGAATGAAGAAGAACATGGAACAAACCATTAAAGATCTGCAGAAACGACTGGATGAAGCAGAACAAATAGCCCTGAAAGGTGGCAAGAAACAGATCCAGAAACTGGAATCCAGG
Seq A exon
GTAAGTTTGCAATCAAACTACAGTTCGCTATCCCCTGTCTTACAGAACTGGGACTGGGTAGATGGCCTAGGGCTGCCTAGTAAGTTCAGAGAGGCCGACAACAGATGCTGTGAATGCTTTCCTCTGTTTCACGGAACACATATGAACGGTTCTTGGACACACATTTCCCTTTCATCATCCAGTAACTATGAACTGTTGTAGCACAGCAGTTGGCCAACTTCTTGATTAAAAAAATAATGTCAAACTTTAAAAAGGAATGGCACAACATCTAAAACTGGGAAAGGCCTCTGCTTGCTTCACTTAAACATTTTTTTCTCTTGCCAAAATGAAAATAGAGCATCTGGTTCTGAGTGGGACCTTTGACTGCTGGTTCAGCTTAAATACGCTTAAGAAAAAGTAGAACGAGAAGTAGAATAATCCATTTTTGAAATTCAACTCTATTAAGATGCTGAGAAGAAGAGCAATTCTTGAACTGCGAACTATATTATCTGCTGCTTTATACACGTAACATAACAGCAAGAGGTTTTTCTTTTTTGCAG
Seq C2 exon
GTTCGTGAGCTGGAGAATGAACTTGAGAATGAACTCCGCCGCAATTCAGATGCCCAAAAGGGAGCCCGCAAGTTTGAGAGGCGCATAAAGGAGCTGACTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=NA C2=0.829
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0003816=Filament=FE(20.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100),PF0003816=Filament=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATGATGGCTGAGGAGC
R:
AAGTCAGCTCCTTTATGCGCC
Band lengths:
270-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]