RnoINT0096454 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54215687-54217692:-
Coord C1 exon
chr11:54217522-54217692
Coord A exon
chr11:54215792-54217521
Coord C2 exon
chr11:54215687-54215791
Length
1730 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
GAAGTGACCTTTTGTTACAGGTG
3' ss Score
7.91
Exon sequences
Seq C1 exon
GCAGCCAACATGTGGGAAGAACTGAAGAAAGAACAGGACACGAATGCTCACTTGGAGAGGACGAGGAAGAATATGGAGCAGACGATTAAGGACTTGCAGAAAAGGCTGGATGAAGCAGAACAGACTGCTGTGGTGGGGAGTAAAAAGCAAATCCAGAAACTGGAATCCAGG
Seq A exon
GTAGGCATTTGTTTGGGTAATGGTGGGGGCCTAACAGCCTTCATTCAAGGCCTTAATGTCCTGGAACATCACAGCTCATCACGTTGTTTAATGGCACGTTCAGACGCTGGCAGCGTATGATCTGAATACGTGTGTTCATTATCGTTTGACCTTGGGTCCGCTGATAGGGCTTTTCTGGGTCTGGAGGAAAGTTGTCTTCGCTCTTACTGATGGATGACAAAACATCTTCCCCCATTTGGCACACCCGTTCTAGGCTCTTAGCCCACTCTCCCCAAATACACCCTTGCAGTCTTGCTCCTGTGCCAACGTTTCCATCATTTTCTCTAAAGAGAACACTGCTTTCCTAACAGGTAAAGGAAGGGGAGAAAACACACCCATGATCCAGACAGACTCAGTGCAGATACAAGCAAGCCAGATACAAATGATGTGGAATCCACCATAAGGGACGTTAACAGCACTTAATGACACTACCCTAAAACAGGATTTTTAAGATTACTGACTTGATTACAATGATTATGTGTATAGTACACTTCATAAAAGTTAAAAGACTATTCTGCAGGGATTGAATGGCTCGGAGGGACCCCTGAAAAGTACCACATACACTTAGGTGTATTTCTGGCACAGCCATGTAATGAAATATCAACACAGACTAGTGATCTATTCAGTTGTGTTGGCTGAAAAAATGAGGATGGTCTCAGTAATATATTCTGGAGATCATGAATAATAATATAAAGGTAGTAAAAGTGTTACAAAGTGTTTACAATCTTCTGATCAAGAAAGACCAATAAAAACAAGTCGTCCTAAGAAGAGACCAAAAGAGATGGAACTTAGACCTTTGAAATTCACTGTTTTATGTGTTTTAATGGAAAAATCATGTAATTTTTATGTTTCAATTAAAAAAACAAGTTTATTTCGAAAAGAAAAACCATTCATCCTTAAAAATTTAGTACTAAAATTAAATATATATATCTATATATATACACACATATACATACATACACACACAGAGAGCATATACAGACAGACATACAGACACAAAACATGAGAATACACACATACAACACAAATACACACATAGGCACAAATGTGCATGCACACACACACACACACACACACACACACACACACACAATTTTGCAATGTTGCAATGTAAGAAGAGAGGCTTACCTCCTCTCCTTGAATCAGTCTCTAACAATGTTGGGTCTTAACCATGCTTTCATGAACACCCGTAGGTTAATAGCCTCAGTTTGGGTGGTGCTTTAATTCCAGAGAGATTGTCCTATTTAGTCACTACAAGCACGAAAATGGATATGCCTTCCTTTAACTATTCTTTAAGTACACTCTTCAGTGGGTAATAGTAGGACAACTGTGATGATTTGTATATGCTCAGCCCAGGAAATGGGACTATTAAGAAGTGTGGCCTTGGAGTAGGTGTGTCACTGTGAATGTGGGCTTAAATACCCTCAACCTAGCTGTTTGGAGTCGAGTCTTCCATTAGCAGCCTTCACATGAAGATGTAGAGCTCTCAGCTCTACCTGCACCATGCCTGCCCAGATGCTGCCCTGCTCCACCTTGATGATGATGGACTGAACCTCTGAACCTATAAATCAGCCCCAATTAAAGCTGTGCTTTTAAGACATGCCTTGGTCTTGGTGTCTGTTCACAGCAGTAAAACCCTAAGGCAACAGCCTTGTTACCAGCCTGTGGGCTGAAGTGACCTTTTGTTACAG
Seq C2 exon
GTGCGGGACCTGGAAGGTGAACTGGAGAGTGAAGTCAGGCGCAGTGCAGAAGCCCAGCGGGAAGCTCGCAGACTGGAGAGAGGCATCAAAGAACTGACTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.914
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACATGTGGGAAGAACTGA
R:
TGATAAGTCAGTTCTTTGATGCCTCT
Band lengths:
271-2001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]