GgaINT0119207 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86883012-86883826:-
Coord C1 exon
chr1:86883656-86883826
Coord A exon
chr1:86883117-86883655
Coord C2 exon
chr1:86883012-86883116
Length
539 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GAGGTTTTTCTTTTTTGCAGGTT
3' ss Score
9.79
Exon sequences
Seq C1 exon
GCAGCAATGATGGCTGAGGAGCTTAAAAAGGAGCAAGATACTAGTGCTCACTTGGAGAGAATGAAGAAGAACATGGAACAAACCATTAAAGATCTGCAGAAACGACTGGATGAAGCAGAACAAATAGCCCTGAAAGGTGGCAAGAAACAGATCCAGAAACTGGAATCCAGG
Seq A exon
GTAAGTTTGCAATCAAACTACAGTTCGCTATCCCCTGTCTTACAGAACTGGGACTGGGTAGATGGCCTAGGGCTGCCTAGTAAGTTCAGAGAGGCCGACAACAGATGCTGTGAATGCTTTCCTCTGTTTCACGGAACACATATGAACGGTTCTTGGACACACATTTCCCTTTCATCATCCAGTAACTATGAACTGTTGTAGCACAGCAGTTGGCCAACTTCTTGATTAAAAAAATAATGTCAAACTTTAAAAAGGAATGGCACAACATCTAAAACTGGGAAAGGCCTCTGCTTGCTTCACTTAAACATTTTTTTCTCTTGCCAAAATGAAAATAGAGCATCTGGTTCTGAGTGGGACCTTTGACTGCTGGTTCAGCTTAAATACGCTTAAGAAAAAGTAGAACGAGAAGTAGAATAATCCATTTTTGAAATTCAACTCTATTAAGATGCTGAGAAGAAGAGCAATTCTTGAACTGCGAACTATATTATCTGCTGCTTTATACACGTAACATAACAGCAAGAGGTTTTTCTTTTTTGCAG
Seq C2 exon
GTTCGTGAGCTGGAGAATGAACTTGAGAATGAACTCCGCCGCAATTCAGATGCCCAAAAGGGAGCCCGCAAGTTTGAGAGGCGCATAAAGGAGCTGACTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.693 A=NA C2=0.686
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.8=100),PF0003816=Filament=FE(25.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.1=100),PF0003816=Filament=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATGATGGCTGAGGAGC
R:
AAGTCAGCTCCTTTATGCGCC
Band lengths:
270-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]