GgaINT0119210 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90776485-90777928:-
Coord C1 exon
chr1:90777791-90777928
Coord A exon
chr1:90776622-90777790
Coord C2 exon
chr1:90776485-90776621
Length
1169 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTTTCTCAATTGCATTTCAGGTT
3' ss Score
9.75
Exon sequences
Seq C1 exon
GAAGCACAAGCCAATCTGTACCTTTCGAAGTACAGAAAACAGCAACATGATCTGGACGATGCTGAAGAAAGGGCAGAAATAGCTGAATCTCAAGTTAACAAGCTGAGGAGCAAGTCAAGGGATATTGGCATGAAAAAG
Seq A exon
GTATGGTTTTACTCCATGGGGCAAATGTGACTGGTCGATACATAGTGGGCAGAAGTTTCCCAACCGTTTTGCATATGTGATATTAAAAAGCTCTGTCTCTCCCTCCCTGTAATGCTGTAGATATCTATGTATACAGTGGAGCCAGGGGATTACTGCATTAACAAAGTGCCAGATATTCTAACACTGCTCTTTCAAAAAAACCTGCATTGATTTGAAGAGCTGGATGAAAATACTAGTTGTTAGTCATGTGGTGTGATTAGTAATGAGAAATACAATTGTTGTATTTTGCACCTGAGCAAACTGGTAGCATAAGATTGAAACTGAAAGGTGCTATGAAATCAAATCTCTGCCTGCCTGTACCTGCCTGATAGCAACCAGGGAAAGGAAGGGTGATGTTGCTACTTGTAGGAATGACAGAAGAGGAGCAGGGTCACTGCTTTTGTTCGCTTCATTTGCAAAGGTAGCATCAACTCCCCTACTTAACATCATATAAATGTAATGGAGGTTAAGCTCCTACGTCAAGTAAGAGAAAATAAATCTTTCTGTATTATTTAGGTGTTTTTATCCTATTCCGTCCTATCACTTCCTTCGTTCTTCTGTATCCACAATTCTGTGGAAAGGAAATACTCCAATTTCTGTTTTTATACTGGACTAATAAAGTCATCTTTAGCTGAAATAAATTATTGTAGATTCACTGTCTACAGCAGGGCTACATTAATACTAGATGAACATCTGGTCTTTTACACATTTACACACATCCTTTAGGGAGAAAATAAAGACTTTATTTATTAGTATTATTAGATGAGCATTAAAAATAGTTTCCTCATACTGCTACCCCTATTCCTGGAAACTCTAGGAAGTATGTGTGATTCAGTGCAAACAACATTGTACTGCAACATGTCAGTACAGAAATCATCTGCTCTCAAAGGATGCATACACTAGCATTAGGACAAGCCTATATTCTCAGCTGAAGTAAGACAGAGAAGTTTGGCTAGATTCAATACAGTATGTGCATTTAATGCTAGTGTATTTCAGCTATATAAGCTGGTAATGCAAAGAAGTACAAGCATTAGTGAATAGAAGTTTTTGTCATTTACTTGTGAACTTACCCTAAACCCCTGCAATGCTTTGTTTTTCAACAGCTATCTACTTTCTCAATTGCATTTCAG
Seq C2 exon
GTTCATGAAGAGGAGTAAGTGCGGTCCTGGCTCCCAGATATAAGATGATGATTCATACAATCAGGTATAACCAAAAGCAGATGTATTAAAACAAAACTAAAACGAGCACTTACAAAAATAAATATCAAGTGCAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(80.0=87.0),PF0026115=Tropomyosin=FE(75.0=100)
A:
NA
C2:
PF0003816=Filament=PD(1.5=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACAAGCCAATCTGTACCT
R:
TTTGTAAGTGCTCGTTTTAGTTTTGT
Band lengths:
254-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]