HsaINT0107660 @ hg38
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108380369-108383729:-
Coord C1 exon
chr3:108383595-108383729
Coord A exon
chr3:108381560-108383594
Coord C2 exon
chr3:108380369-108381559
Length
2035 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ACTGACATTCTGTTTTTCAGGTT
3' ss Score
10.34
Exon sequences
Seq C1 exon
GAAACACAAGCCAATCAATACCTTTCCAAGTATAAGAAACAGCAACATGAGTTGAATGAAGTGAAGGAAAGGGCAGAGGTGGCAGAATCTCAAGTCAATAAACTCAAAATTAAAGCAAGAGAGTTTGGGAAAAAG
Seq A exon
GTATGGCAGATATTCAACTCTGTTCTAACTCTTTAATCATGTTTGTTTAGGGCTGATGTCATTGCATGGACCAGTATAACAAGAAATTTGTTTTTCTCCTTAAAAGCTTTTAAAAGATAAGAACAAAGGGTTCCAATAAAATCTTCCCATGTTTGCTAAATTATACTTGTCCTGGTAGATGAAATGCTAAGCATTTGAGTGACATGCACATTGTATTTATACTTTTCAAATGCTTACTTCCATGTTAACTTGCAGGATCTAAGATTTAGGGCCTGGATTCATTAGTGTAAAGTAGTCAGGAGTCCATGGAACAAAGTTGATTTTAAAAAGCACAGATGGATCGGCTCAAAATTCAGAATGAACTCTTTCCACAGTAGACACATACGTGACTTTGTACCATATCAATTTGGAGTCCAAGAGGGAAGATGTTTAAAATTGAGGCAGTGAAGGAAAACAAATACCAGAGTCTTGCTTTGTAGTTCTCTGCTTTATATTCCTGATTCTGCCCAAAAACACAGAGAAAGGATCTTTCTATGTCTCTTTGGTCCACAAAATGGCTCTTCTAATCTAATGGTAGAGGCCATTGCCCTGATTTTACTGGTAGAGTGACAAAGAACAATGTACTAAATGTTTGGTAGGGTCAGGTAGTCTTGGCTTCCTTGTTGAAATTTTCCCAGGAACACACAGTTTTTAAACGAGGTCTGGCTTTAGGCGAAAGGAATCAAAGGAGATTGGATAATGTGGTATTAGCTAATAGATTGCCTGAAATCACTGAGCATAGCTTCTGGCATAGTTAGGCACCATCATTTCATTATTATTATTTTTTTTTTAAACGTGGTGCATCACCAGCCCTCTTTCTCTGTGTTTTCGGGCAGAATCAGGAATATAAAGCAGAGAACTACAAAGCAAGACTCTTGCATTTGTTTTCCTTCACTGCCTCAATCTTAAACGTCTTCCCTCTTGGACTCCATATTGACATGGTAAAAAGTCACACATGTGTCTACTATGGAAAGAGTTCACTCCAAATTTTGAGCCGATCCATCTGTGCTTTTTAAAATCATCTTTGTTCCATGGACTCCTGATTATTTTATACAAATGAATCCAGGCCCTAACTGAATTACTAGTAACCCTGCAAGGTAAGTTGATAGGGTTGCCAATAATATGCATAAATACTACCTTAAGGGAGGTCAAAAGCATCTCTTTTGAAGGAGAGCCTAAGAGTTGGTTATATTGAATATACTTAGATCTAAATATAAGAAATATGAATCATTGAGAGACTCCAGAAATTTTTTACTGATGCCTGAATAGCTGCCTCAAGGATAAGTCCTATGCGAGAGGGGCAATTAAGTGGTTTGAACTTTGGCCTCAATTTGAGAAGTGTTGTGGCACTGGATTTAGGGTCTTCTCTGCAGAGCCCACCAGCAACCCCATGTAATGACTTGTTTAGGGAGGTGCTTCCCATGTGCTGCAATTGCATTCAGCTGCAGGAGGTTGAAGGGCCTTCAAAACAGATGCCATGCATTCGACTTTGTCACAGTTATTTTCAACAAAGAACAGAGTGAGTGAAGTAGAAATTGCTTTTGAGAGGCCAGAGAGGAATAGGAAAACCTTCCTTGGCAGTGCAATGACTAATTGTTTCCCCTTCACAGAAGAAAAGCCAAAAAATCCTCAACTGTCATATGCACAAGGAAGAGGTTTGCTGATAGAATTCTGTGTCAGGGCTGGGGAGCAAACTGGTGATGTGGCTGCAGAATCTTTCTCCTTATGGGGTTGGCAAAGGGGGGCGCTGCCTTCATTGGCAAGACAAGGCAGGCAGAAAATTGAGAGTGACCGAGCATGCCCTTGGGGTGAATTACCAGGGTCTGCTTTCTGTAATGCAGATAATTGCCTCAATTCCCTGCCTCCCTTTGAAGTTAATGAAGAGTTGGCTAAGGCCTGCTTACCTCTGGAAGGGACTCAGCTTGGTTCTGGACATGTGTTCCACTGGTGAAAATCACAGGAAATTCACAGAACACACTGACATTCTGTTTTTCAG
Seq C2 exon
GTTCAAGAAGAATAGCATCCCCTGCTTTGAAAGGACAACAGCTGGAGAAGTACAAGGAAGGTGCTGTTTCATGGCCAAAAACTTAGGTTGCATGGAAACATTTTTAAAAACATGTTTAAATTGCTTTTCACACCATATAAACAAGGCAATTAGAAAAATAATTAAAGGGAATATCATTGCTTCCACAGTTAATGGGGATTTTTTGATCCTCAAATGCAAGTAAACTACCTTCTAATGCTTCACATGACAGATTAAATAAATGGAAGAACCTTTTCAATTCTGATGTTTAAAAAATGAATAAATACTTGATCCTTTGTCCATATTTCCTCTTAATGGGTAGGACTCATAGAAGATGTCCTTAGACCAGTCACGCTTCATGGGGACTAGGGCATGTTGGTGAATGGTTTTTACTAAAGTTAGGCAACTTTGGCTTGATTCACCCCTAAATCTATGAATGTATATTGTGAGCCAGCAGTGGTAGAATGGAAGTCATAAGATCTCCTCAGCATTGTGATATAAATATAGCTATAGTTAGGCAATTTGAACATGTAGGCAAAACTCTCCTAATCAACACACATGTAGGCTATATGCTGGTACATGCTTTAAACATGGAGGTAACCCCACACGAGACATTCAGTGACAGGTAATATGCTGGATTTGTGCAGTACCGATTTGGCTCAGCTGGAGGAACATGTCCCGGAATTCCTCTCTCTCATGGTTCTGGATTGGAGTAGGTCATAAAGAAATTTGCATTAATTTGATCAGCAGCTATTTTATACTCATAAGGTCAGTGTACAGACCCAAGCATGGTGACAGCTTGAAAATATGACTCCAGGCCAAAAAGGGGAGCTAGAAGAGACCAGAGACAGCTCCCTGGACCCAGAGCTCTTCCAGCTCCTGCCAGCCTCCTCCTTCAGCTTTGCAAAGTACTGGCCAGGTGTGTGTGCAGCTCCATGGCAACCAGCATCAGCTTTTCCTGAGATCACACACAGCATTGCAGTGGAGGCCGTGAGACAGACATGGGTTCTGTTTGTTCTTATGGACTTCCCTTCATCCTTGCTGCATTCACAGTCGACCTACAGTGACTTCAGGCCCAGAACCAGATGCAGAGGGAACAGCCTGGCCTAGACTTCTCCACCAGCACCCACAATTGTGTAAGGCTGAAGCTCTATAATAAATCTTTATTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821:ENST00000273353:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development