DreINT0099905 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24945197-24945642:-
Coord C1 exon
chr11:24945496-24945642
Coord A exon
chr11:24945406-24945495
Coord C2 exon
chr11:24945197-24945405
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGCATGT
5' ss Score
2.03
3' ss Seq
TTTGTTTTTACTCATTTCAGCTT
3' ss Score
7.8
Exon sequences
Seq C1 exon
GAGGAACAAGCTAATTCCAACTTGACCAAGTACAAGAAGATCCAGCATGAGCTGGACGACGCTGAGGAACGAGCAGATATCGCAGAGTCTCAAGTGAATAAACTACGGACCCGCTCCAGAGACTCTGGCAGTAAGACTACTCCTAAG
Seq A exon
GCATGTTACCAATGTCATTTCGTCTTAAATTAGATTTTTTTCAAGGATGTAATGAATGAATTTACTCAACTTTGTTTTTACTCATTTCAG
Seq C2 exon
CTTGCAGAGTGAAGAGGAAGGGGCCATTAACTGTGGCCACAAAACCTATGAGCAAGTTAAAGAAATCTGTATGTAGAGCATTAGAAATGGGTATATTGTATTTAACTGTACTACTAATATATACTGCAATCAGTGGTGGAAAGAGTACTGAAAAATGATACTCATGTAAAAGTACCATTAACTTGCCCCAAAATATAGTGCAAATTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=81.6),PF0003816=Filament=PD(12.5=71.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGATCCAGCATGAGC
R:
TGCTCATAGGTTTTGTGGCCA
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]