MmuINT0103406 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:49196869-49199217:+
Coord C1 exon
chr16:49196869-49197003
Coord A exon
chr16:49197004-49198640
Coord C2 exon
chr16:49198641-49199217
Length
1637 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
ACATACATTCTGTTTTCCAGGTT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GAGGCACAGGCTAATCAATACCTTTCCAAGTATAAGAAGCAGCAACATGAGCTGAATGAAGCCAAGGAGAGGGCAGAGGCCGCAGAATCGCAAGTCAATAAACTCAGAGCTAAAGCAAAGGAACTTGAGAAAAAG
Seq A exon
GTACAATCCCTTTGAAATGCTGTACAGCCTGTTGCTTCGGGCCTTGGGGGCATCACATGGATTAGTATAGCAAGGAATGTCTTGCTTTTCTCTTTAAATCTTTTTTTTTTAATAGCCAAACAAGCTCAAATAAAGTTCTTCCCCCACTTATTAAATTCTACGTGTCCAGGGAGTATGGAATTGATAAACGCTTGAAGTGGAAAAGCATTCTAGATTTATATTTTTTTAAGCCCTTCATGCCAGGCTAACTTGTAAGCTCTGAGCGTTGGACCTTTAACTTATTAGTGCAGAATACTGAGCAATTCACGGAGCAAAGGGGATTTCAAAAGTACAAAGGGACCTTGGAATTTGGAGTGAATTCTTTCCACAGTAGCCAAGCAAGTGAGTTTGAATTAGGTCAAACTGAAAACTAGGAGGAAGGTGGTCAGAAGTGAGCCAGGGGTTGGTACCAAATTCTGGAGTCCTGCTTTCTAGGTCCCAGGATTCAACTTCTGGCTCCTCCCTGAAGCACAGAAAGGTCTTTCCATGTCTCTGTCAGGAGGCCAGTGCTGTATACAGAAACTGGAAGAAACAACAATGAACTCAGCCATGGATGCTGGGCAGGGACATCTCTGCTTCCTCACTGAGAGTTTCCTTGAAACATGGTTTGTAAATGGCATCTGCCTTTAGGACAAGGGAATTAGAAGAAATTGGATAATAGAAGTAGCTACCTTTTCTACAAGGCCGGAAAAGCAGTGAGCACGGCTCCCAGCACCGGTGCTCCATTTGCTCTCAAAACTTGGTTCATGTTGAGCCTGCTCATTTCTGGTAAATGAATTACTGGTAGCCCCTCAAGGTACGCTGATAGGATTGCCAATCATAAATATCGACCTTGTCGAAGGAGGCTAAAAATTGGCTACATGGAAGACACTGAGATCTAAGTCTGAGAAGGCTGAATCATTGGTAGCTCTGGAAAGATCCCACTGCTGCCTGGACAGCAGTCTCAATCATAAGGGCCAGTTGGAGGGCTCTAGGGAAGTGGTTTGACTGGTGGCCTCGGCTGGAGAAGTGTCACCCCACTGTTTCAGGGTGTCCTGTGCAGAGCCTGCCCAGCAAGGCCATAGAAAGGATTTTCTTAGGGAGGGGCCTCCCCTGTGCTTCAATTCTCAACTTCGGGAGGTCATGGGGCCTTCAAACCCCACCCACATTTCACCTTGTCACAGCTGTTTTTTAAGAACGAATAAAACAAGTGAGTCAGAAATTGCTTCTGGCAGGAAATGAATAGGGAAACCTTGCTGGGCAGTGTGATGACTCACTGCTCCCGATTCACAGAAGAAGAGCCTAAAATCCTTCAACTGCCATAAATACAGGGAAAGTTTCCTGATGCACTCTATGTCTAGAACAAACCAGTGATATGATTGCAGCATCTTTTCCAGTGGGGGAGGGGAGGCAGAAATGGAGAGTGACAAAGTATGTCCTTGGGGTGAGTCACCTGAGCCTGCTCTCTGCTAGCAGGTAATTAATTGCCTGACCCCCTTGCCTCCCTTTGAAGCCCATGGAGAGCTGCTGAGACCTGTTTCCCTCTGGAAAGGGCTCACATGGGTTTGGGACATCCCTGGAATGTCAGAGCACACACAGACATACATTCTGTTTTCCAG
Seq C2 exon
GTTCGAGAAGAATAAGGAGTTTCTCTTCATTAAAAAAAAAAAAGACAACTGGAAGCAAGCCTTTAAGAAATAAGTATGTGGCAAGAATAGCAGGCTAAGGAGATGATGAAGAAAATGTTCTGATCCAAAGGACTATAACCACCTCTTGGATTAATGGATGGCTTTTTGATTCTCAGTGGCATGAGACATCTCTCTACTACAATTTCACACAAAAGACTTAACAGATGTAAGAATCAATTTTGATGTTAGAAGCAGGCACACTTCTCCTTTCCTCCATTTCTTCATGCATAGCACTCAGAGAAGAGCCCTTAGTATATGCTTCATGGAGTCTGGTCCATGATGAGGAAGGGATATTCAAGTTATCTAACTTTGCTTAACTGGTCCCTGTATTTGGTGACAATTGACAAAAATGTCTCTTAGCACTGTGGAGCAGGCATTGCCATAGTTAGGTGCTTTGAACTTGTAGGTAGACTATCCTAATCAAGAAACATGTAGGATCCACGCTTATGTGGACTATAACCTGAGATGGGTTGTACAGTTGTGGCCATGGAGCTAAGGAAGATGAGCATGTTCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
-Myh15:NM_001166210:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATGAAGCCAAGGAGAGG
R:
AGGAGAAGTGTGCCTGCTTCT
Band lengths:
353-1990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: