GgaINT0120304 @ galGal3
Intron Retention
Gene
ENSGALG00000013007 | CACNA2D4
Description
NA
Coordinates
chr1:63108735-63111281:-
Coord C1 exon
chr1:63111164-63111281
Coord A exon
chr1:63108846-63111163
Coord C2 exon
chr1:63108735-63108845
Length
2318 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TCGCTCTCTTTTCTTCGCAGGAT
3' ss Score
10.83
Exon sequences
Seq C1 exon
CCCACAAGCACAAGAAGCACGACACGCTGCAGCCCTGCGACACAGAGTACCCCGTCTTCGTGTACGAGCCGGCCATCAAGGAGACCAACGGGCTGATCGAGTGCGGGGACTGCCAAAA
Seq A exon
GTAAGAACTACAGCTGCCCTTCTCTTAGCGGGTATCGCAGCGCCCGTGCCCAAGCAGTGCCAGCAGTGGAGCCTGGTGGCTGTGGGAATGGTGACAACCTGAGAGGAGCCACTTGCCACCGTGCCCAGCACATGTCCCATGCTGTGTATGCAGCGAGCCCATCCCCAGAGAGGGGAACGGCCCCGCTGCAACTTCTTGATAAAGAGCAGAATCAGAGCCATCTGTTAATAAGCAGAGGTGGCAGGGGGAGGGGGGGGTGAGGGGAGCCTTTAAAAAAAAGAAGGTCTCTTTCCATTCTGCACATTTCAGAAAGGAACCCTTTCTGTTTTTTTTTTTTCACGTTTCTGGCAAATGTTTTCTCCTTCAAATTTTCCTTTCTGCAATGCTTTCAGCTTTCCTTTCCCCTTCTTATTTTCTTTTTTTTTTTTCTGTTTTTCTACCCCCCCCAAAAAAAAGAAAGGAGGGATTAAGGGGGAAAAAAAGAAGTGTTAAACCAAAAGAAAGCAAAACACGGGTATGCAATTTACTTTCTGTTTTCATTTGAAGAGAATGAGCAGTCAAAAATAACAGAAAGGCATTGTGAGAAGAGCCATTTTCAGCAGTCACGTGGCACCCTCAGCTCTCACGTGTGGAAAGGTGAAGAGAGGATGAATTTCCACTGGCCTGGCTTTTCCTAACGTGCTGCTGCACAGACCCACACAGAGGCCAAAGAGATCTGACTGGAATCCCTCATAAAGCAAAGCAAAGCCCTACCTGGTCTGACTTCAGTCTTGGACTGGCTGCAGGAAAGAATTAAAGGTCAGGAAAACAGCCTGTGCTAGTCAGCACGGCTTGATGAAGAACAGGCTGTGCCACGCATTGCCTGAGCTCAGAGCATGAATTTGCTGACAAAGGCTGTAGGGGGAGTTCTGCAAGGCACAGACCAGCTCCGTGCCCCATGGGGATGCAGCATGCCTTGCCTGATGCTCACCACTGCAGCAGCAAGACGGGGTCTGCTGCTCCCGTGTAGTTAGAGGTGTGGGCTGGGGTCGCAGCCCCGGAGCTGGGTGTGTCTCTTGCACTTTTCATGCAGATGTTCAAGGGGAATGAGAGAACCAGCAGAAGAGAACCAGTGGAGTGTTAGCTGATGACCTGCTCAGACACACAGGCTTTCCCGGTGCCTTTTAGAAACTCCAGATGGTTCCCAGTGCAGGGAGAAGCTGGGCACTGCTTCATTCTGGGCACCTCCATTGTGATGACAGGGTTAAAATCTGCCTGTCCAACCTCCTGGAGCAGTCATCACGCAGGAAGGAATGAAACAGCCTCAGCGAGTGGCAGCGTGTGACATTCAGCACCTCTAGAAGCAAATATGAAGATCTCTGGAGGCAAGAAGCAGACACTGGGCAGTGAGCTGTCAGGGAAATTGGTTCTAAAGAGCAGTAGAGTCGGTCAGGGCATCCTCACAAACCTGTATGCCCACAGCCCGACCCAGAAGCCCTCTGCCTCATCCAAGAGCAGGAACAGGAGAGGCACAGACAAGGCACGGGGTGGGAGGTGATGCAAGCTGGTGAGGTGCCACTATGCAGCCACAGGCACACACAGCTTCCTGCGTGCAGAGCCATGCCTGAGCTGCCCAGGCACGTGCACATGTGTGCACACTCATGCACAGTCACACACACGTGTGTGCCCTGCCCACATCAGCCCTCCAGCTCCTGCAGAGCCCACACTCCCTCATGCAGGTCCTCACGTGGATGTCCTCAGGAAAAGGCTTGCATCTGGGTTCATCCTCATTTGCATGTGCCCATGTTCACCCGTGGACCTTTCTGCTCATCCCTCACGGAGGGGATGGGACAGACAGACTCAAAACTGCAGGGTGATGAAGCACCCATGAAGTTACTGGGATCCTTCATTGCTCACTCAAGTAATGCGATGTTCAGCAGACCTCTGCCCTTTGAGGACCACAGAGCACACAGTCCCTCATGTTGTTTGGGCACAAATAAAGATTGGCTGAGTGCTGGCACACCTCCTCGCGGAGCCAGGCCTTCCAGCTGTGCTCCTCTGAGCCACACGGCCCAGTTCCATGCTGCCTGCATGTGGCTGAGGTGCGGCTCTGGTCAGGGTTGGGTTTTGGTCAGTTGGGTTTTGCTCCTGATTGTGGCTTTTGTGCACGTGGAGCTGGGCACTTCTCCATAGCGAGGTGTACTCCCCGCTCCTCCCCCGCCTTCTGCTGCCGCCCCTTCCGGAGCTGCTTGCGTCCCTTTGCATTTCTTTGCACCAGGCAGTGGTGGTGCCGTCCAGGGTCTGGCTGCCATTTCTGCATCGCTCTCTTTTCTTCGCAG
Seq C2 exon
GATGTTTGTGGCCCAGCAGATTGCCAGCAGCAACCTGCTGCTTCTTGTCACAGATGCCACCTGCGACTGCAGCATCTTCCCACCTGTCCTGCTGGATGCGAAGGAAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007:ENSGALT00000037501:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]