GgaINT0120562 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:412482-419279:+
Coord C1 exon
chr1:412482-412495
Coord A exon
chr1:412496-418660
Coord C2 exon
chr1:418661-419279
Length
6165 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CTTTCTTTCTTTTTTTTCAGGAT
3' ss Score
13.91
Exon sequences
Seq C1 exon
CGCGGAGAAGCGCG
Seq A exon
GTGAGCGGGGCGGAGGGGCCGCAGGCCGCGCCCCACAGACGTGGCGGGGAGGGCCGAGGGGTTGGGGCTGAGGGGCAGCGGGGCCTGTGCTGGAAGCTGGGCCTTCCTCCGTGCGGGGTTTGGGCCGAGGGCTGCGGGGAGGGGCTCTGGAGGCACGGGGGGGCCGCAGCCTGTGGGCTGTGGGGGGGAGCGGGGCTGCGGCCTGGAGGCTCCTGACCCCGGCCTACCCTGACCCCGACCCCGGCCTACCCTGACCCTTATCCCTGCCTGACCCTGAGCCCGGCCTACCCTGAGCCTGAGGGGCAGATCGCCATTACTGCCCTGGGCGGGGGGGGGGACGGGACGGACGACAGCTACAGCACTGCATCCAGTGTGGGGCTCCCCAGTTGCAGGCAGACTGGGAACTGCTGGAGAGAGCCCAGCTGAGGGTGAAGAGATGGTGGGGGCCTGGAACACCTCCTGATGAGGATAGGATGAGAGCCCTGGGGCTGTGTGTGTGAAGGAGAGAAGGCTGAGGGGGGTCTGAGCAGTGCTGGTGGATATGTGAAGGGTTGGGGGTGAGGAGGAGGGGGCCGGGCTGTGTTTGGTGGTGCCCAGCGCCAGGACAAGGGGCAGCGGGCACAGATTGGAGCCCAGGGAGTTCTGTGTGAGCGTGAGGAAGAGCTGTGTGCTGTGAGGGTGGCAGAGCCCTGGCACAGCTGCTCAGAGAGGTGGGGGAGTCTCCTTCTGTGCAGAGATCCAAACCTGCCTGGATGCTGTGTGTGCAGCTGCTGGGGGGAGTAGTGGGGGGGGTTGCAGTGGGGGAGCTGCATAGAGGTCCCTTCCAGCCCATCCTGTTCTGAGGTTCTGTTACATGAATGCTGTTGTTTGTGGTGCTCATTTCTGTCACGCTGTGGGATCCAGCTGCTAGAATCAGTCCTGCAGTCCCAACAAGCTGTGTGAGTAGGAGGAGCTCTGGGTTCATGCATGGTGGTACCCCACAGCACTACTGGACCCAGAGCAGAGCATCAGGAAAGGCCTTGGGCTGCAGGGCAGGGCCTGTCCAGGAGCCACAGCGTTCTCTGAATGATGGTGAGGTGGATTTTGTTGTTGTCTCCCCAGTTCTCTCAGTGCTGCAGCCCAGGTGAGGATCCAAGGAGCGTGGCTCTGGTGCCCTCAGGCTGTTCCCATGCAGCAGGTGGGATTCAGGCTGAACTCTGTTGGCTGGGACACGGCTGCTCGGTTTCTGGTTCCTTTCTGTGCTGCCTCTGAGCACGTTGGATGTCAGGAAACATTTCCTCTACGAAAAAGAGTTCTGGAAGTGCTGCCCAAGGAAGTGGGGGAGTCCCCATTCCTGGAGACGTGGCACTTTGGGACACGGTGGGATGTGGTTGGATNNNNNNNNNNTCAGCCACCACCAGGTGAGTTAAAGTGAAAAATAGAGGTATATGGGGAAAATGAGTCCCCAGCATCCTCAGTGCCCCGCGTCCCTGACGTCCCCAGTATTCCCAGTGCCACCGGGGTCCCCAGGCACCCCGTGGGGTCACAGGGATGGAGGGAAATCGCAGAGACGGAGGGATGGGATGCAGTGATGTGGGGACACAGGGATGTGGGGACACAGGGATGTGGGGACACAGGGATGGAGGGGCATCACACAGACATAGGGACGCAGGGATGCGGTGACATGGGGACATAGGGACCTGTGGGGATGTGGTATGTGGTGCCCTGCCCAGGACATCCCTGAGCTGTGGCACTCTCACCGGCCCTGTAGGGTCCTGGAACACGACCCAGGGGTGCTCTGAGTGCAAAGCTCATCCCCGCCCCCCTACGCATCCCACAGCTGTGTCCCCAGCACTTCATCGTGGGGCCATGGGATGATAGAATCCCGGGAACGTGGAATCATGGGGTGGTGGGCTCATGGGTTATCCCAAGCCAGAAAGGATCCACCAGGATCGTGGCTCCAACCCGTGGCCCCACACCCCAAAACCCGCTCCCTCCAGCCGGGACCGCTCGCTGGGATCGGACCCGAGGAGCGCCCTCCGCTTCCCAAGCCACGCCCCCTCCCCAAAGCCACGCCTATTTCCTCTTACAAACCACGCCCACTCCCCCAAACCACGCCCACCCAGCGGCACGCCACGCCCCCCTCCCACGGAAAGCCACGCCCCTCTCCCGTAACCCCTCCCACTCCCTTTCCCCCAATGGCGGCGCCGTGGCCACGCCCCCTTCCCCGCGGCTTCTGCGCAGGCGCAGTGCGGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCCCCCAGGCAGGGCTGGGAATGGGCTCTGTCCGTGCCCACCTCTGTGTGCTGTGGGGTTGGGGAGCGTGCCAGGACCCCAACAGCCTCGTGCCATCACAGAAACTGAAAGCATGCGGAGCTGCTGCGAGGCCGTAGAGGGGGCAGGAAAGGAAATGGGGTGTGTGGGAGCCCGGCATGGTGCCCCATGGGGAGGGTGGGGCTCTGCATGGAGCTGGTACCCAGCTCCCTGTGGGTATTCATCCCATAGAACTGCCATGGCTCGTGGTGTTCTGACAGTGGTTGAGCTGAGGTCTCTTGGTGCTCGCGGTTCTCTCTGTGCAGAGTGGTGGCTGCTGTCTGCCTGCTGTGGCTGGGGGGGGGCTCCGATCTTCCCCATGGTCTGTGTGGGTCTGGGAAGGAGCAGCATAGGTTGAGAATGTGTCTAGCATTGAGCAAGGGCTCATCGCTGGCTTTCTGTATGGAGCACAGCTTGAGGCCTGGCCCCGCACTGGGTGGAGTTGCTAGCGGATGTGCCATGGGGTGGCTGTGGGGCGGCTGCTGCCATCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCATCGTCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCATCGTCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCATCGTCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCATCGTCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCATCGTCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCATCGTCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCCTCGTCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCATCGTCCCGGGGGTGGCTGTGGGGCGGCTGCTGCTGCCATCCCGGGGGTGGCTGTGGGGCGGCTGCTGCTGCCATCCCGGGGGTGGCTGTGGGGCGGCTGCTGCCATCATCCCTGGGGTGGCTGTGGGGCGGCTGCTGCTGCCATCGTCCCTGGGGTGGCTGTGGGGCTGCTGCTGTTGCAGGACAGCCGCTTGCTGCTGGCAGTGGGATCTCACTGCGTGCTGCCGCGCGCGGCCCAGCCAAGTGAGTCATCATTTGACTCAGACGCAGCGGCCGCTCCACGCGCGTGGAAGCCCCATCCATTGAACCAACCTCCAGTGGTTGCTAACAGTGAGCTGGGTTTGCCACATCCACGTCGGGGGGGGAAGGACGGCTCCGTGTGTGCGTGCACTGCTGCCTGTCTGACTGCAGCACCCCTGCGTGGGGGGCAGCCTGAGGGGTGCGCAGCCTGGAGGAGGGAAGGCTGAGAGGGGTCTGAGCAGTGCTGGTGGGTATCTGTAGGGTGGGGGTCGGGAGGATGGGGCTGTAGGGTGGTGCACGGTGCCAGGACTGCAGGAGCAGCACTATTCTATGCCTGTGTGCCCAGCAGGGCCAGGCTGGTGCTGTCTGCTGCCATCCACGTGTGTCACGGTTCTGGCAGAGTGGGTGAACGTGAGGAGGAAGCACCAATTTGAAACATATGGTGCGACCAAATTCTTTCACTGTTAGTAATATTCTGTTTGCTGGCAGTGAGAGTTTTGGAAACGTATTGTTATTATTATTATTATTATTATTATTTGAAATTTCTCTCGCTTTTAGTTTGCATTTTTCACAGCTGAGGAGGAATCTGCAGATTTGGTTCCCGGAGAGCTTTGTTTCCCAGTTTGCAGCTCTGTGATGCTGGCTGGGAGAAGCAGCTGCGGTTTCGTGGATGCTGGAAGCAAACAAACACAAACAAAGGAGGCTCAGCCCGCATGTGGGCCGTGCCCTGGTGGTCACAATGGGAAGGGGTGCAGTTGTGAGGGGTATGGAGCACGTCTGACCTCATTCTCCCCACTTAGAGGAGCGTGTCCCTCAGGCCTGCGGTGTGGGCATCCTACCAGCTCTGCCTGCGGAGGGCTGGCTGAGGTCTGATGCATTGCCCATCTCGGGGCTGCTGACCCCACAAAGCAAAGGCCCTCTCCTTGCACCAATTCCAATCCCCTTTTGTTTGTGGCGTGGTTCGGAAGCAGCCACGTGTCAGCTCGCAGTGGGTTTGTCAGCTGCTGGTGCCTCGTGTTTGAGATTGGGTCAGCGATGCACGTTGCTTTTCTTTCTTTCTTTCTTTTTTTTCAG
Seq C2 exon
GATGCAGCAGGGACTTTTTGGGGGAAGAAAACGGAGCGTCTCGGTTTGTTAGATGCATCTGTGCTGTGGGTAGCTGTAGGAAGTGGAGCAGAAAACAAGCCAGGCTGCCCGCCCCTCATCGCTGCGTCACCTTCCTGCTGATGGCCCAGATAAGCTGCTTGTGATGTGCAGGGGGTGCCCTGCCCCAGCATGGGCAGCTCTGAGCTCAGCACCCAGCACGGGGCATCCGGGAAAGACCTCAGATCGTGAGGTTATTCCAAGCTGGAAGGGATTCATAAGGATCATTGAGTCCAATCCCAGCCCACCCCCATTGTGCCCACTGACCGCATCCCCAAGTGCCACATCTCCACGGTCCTTAAGCACCTCTGTGGATGGGGACTCCCCCACTGCCCTGGGCAGCCTCTGCCAGTGCCTGACTGCTCTTTTAGAGAAGAAATTGTTCTTCGTATTCAATCTTTTAAGGGTGGGAGAAGGTTTCTGGCATTCTTAAGGTCCTGACCTAATGCTGCTTGGTTTGATTCTCATTTAGATACGTGCAGCCAAACGTCTCATGTTTGAAGAACGGAGATGAGTGTCTATTAGTTGAAACCATGTGAAATAAACTGCGTGCAGGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023980:ENSGALT00000040413:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]