MmuINT0138985 @ mm9
Intron Retention
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89138916-89145742:-
Coord C1 exon
chr15:89145493-89145742
Coord A exon
chr15:89139002-89145492
Coord C2 exon
chr15:89138916-89139001
Length
6491 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCACCTGCTCTTGTTCTCAGGGA
3' ss Score
9.93
Exon sequences
Seq C1 exon
GGGCAGAACTGCGCAGGCTCCTGAAGCGCCCGGGCGGGCCGGCTGGCTGGGAAGATGGCGGCGGAAGCCCTGGTCAGCGGCGCCGCAGAGGAGCGGGCCCGGGGTGTCCCAAGTGTGCAGCTTAGGGCCAGCGCCGGGCCATGAGCGCGCCGCCATCGAACCCTCGAGCCGTGGAGCCCGCCTGCGCCCCTTGCCATGGCGCGGCTCGCGGACTACTTCGTGCTGGTGGCGTTCGGGCCGCACCCGCGCG
Seq A exon
GTGAGTCTCAGCGCCGAGGGGGACGAGCTGGGGGGGACTGAGGGACTGGGACTGAGGACTCGAAGCTAAGAAGACCCGGCCGGAGGCAGGGTCAGGAGTTGGGGCCGAGCTCTCGGGGCTCTCGAAAAGAGGCCTCCGTAGTTATTGGCCACGGTGGCGTCGGGGCAACCCGCGAGGACCCCGGACGACATGGCCTGTGTAAGAAACATCCCTCCTACACCTGGGCACCTGCGTCGCTGTTCCGAGGTGGGCAGGGGCGTGTCGCTCGGGCGTGGGAGGCTGGAGGACCCTGCTGCAGTTCGGTCTCCCCGATTCCAAGTTGGGTGGGATGGGCTCACCCCGCCTTGGCCGCCTGCCGGTGGCTGGGTCTGGGAATTTCAGAGAGGGGGGCGGAACGTTTTCGTCTTCCAGCTTCTCTGACCCAGTGCTAGGTCTGAAGCCTCAAGCACCGCTTGATGGGGTGCAGTGGAGGGGGAGGGGTTCGTCGGTGGTATGGAGCCGGACTTCAGACGAAAGTGTCACACTTGGAGGAGAGCATTCCTGGTGTTCAAGCCTCTAAGCCAGGCCCCTCAGCGGGGGATCAGTGTGGTGATCTAGGAGGCCCTGATCTGGAGTCAGCACCTGTGTCTGAGAGCCCTTCAGTCCTGGGGGTAGGAGAAAACGGAGCCTGACAGTGACATCAACCACAGCCATGGAGACAACAGTGTTGGGGGGTGTTGGCTGGAGTCCTCAGTGTGCCAGGCCCTGCACAACCCTTTGTGTGTATGATCTCATTTCTCCCAATAGCCCACTGAGATTGCCTTGCTGTTGCCCTATCTTCAGCATAGAATCTGGCATAGAGAAGTTGAGTGTGTGGGTCTGGAATGGAGGCTGGGACTTGTACTCTGGCTGTCAGAGTCCACCTGCAGAGGGGCGGTATCTTAGGGACAACTGTGGCCAGATGAGGTAGCCCCTTAATCCCTAGATGTAATGCTTCCTACCGTGTTCCAGTTATCTATTCCACACAGTTATTCTGCTGCTTCTCAGACCAGCTGTCACTGTCACCATTCAGGACCCAAACTTTCTTCTTTGCCTTTCTTCTTGCTAAGTCTCCACTAGGACTGTTCCTTTGTTTAATGTCCACATGATGGACCCTGTATGCACTGGAAAACACCACCACCACCACCACCACCACCACCACCACCTCTGTCTTCAGATCTGTTCAGTACCCTCGCTTCTTTCTGCTCTCATGTATTCAAGTCTATATCTTTTGGCACTCAGTCCCGAGCATCTGTCTTTCCCTCCAAAGAGGGAGTTCTCAAAGGCAGAGACCACATTGTGTTCATCCCCCTGTCCTCCTTGAGCAGGAGGCTTGCCACCAGTGTTGTACTGGCACACACAGGGAGAACCTGTGCTCCAAGGCATAAGTGAAGGCCAGTGAGGTGCCTCCTCTGGAACGGAGGAGGAGTACTGCTGGAGAGTGAGGAAACCAAGCTGGCTGAGGGCTGGCTGGGGTCTCGGGCTGGGCGCTGGGCCAGGGCTGGAGGAATGGAATGGACTTGGATGGTGGTGAGAAGGTTATGAAGAAGGTCCTGTGAAACAGAATGTAGGTAAAGGCCAGGTTGGGGAGGTCTGCTGGGAGTGGAGTAAAATTGAGGGTGATGTGTGGGTAGCTCCATGGGAAGTTGCTGTGGCACGTGGGGGCTTACTGATACAGCTGTACAAGAGGTGTGGACCTCTGACCTCTGTACAGGACGGGATAGAAGGCTGAGGCCAGAGGTGGCTACTTTTCCTGAATCACCGGTGTGATGGAGTAATTCTCAGATTACCCATCACTGTGGCGACTGCAGGCCAGTGAGCTCTCTAAGCACTGCCTTCTAGGGTCAGAGTTGACTGGTTGTTGGCTGACCACTCGGCTTCAAGGCATTCCTTTGAGGAACCAGCCTGGAATCGGGTTTCTGGGTGTGGGCTGAAGGCAGATCTATAAGGCAAGGGATGTGAGTACCAAGAACAAAAGACCCCAAACTGAGGAGCACACTGAAGATTAGTTGTCCTTCCTTTGTCACTCTTCACCGTTGGCTTGCGCCAGTTACCGTGCACTCTCGCCTCAGTTTCCCCGTCTTTATATGGAATGGGCCACATGGAGCTGCTCTGAGGCTGTCAGGAACACTTATGCGTAAAGATATAGCACAGGACTGGCCCAAGGAGATAATTTACATCTCAGATCTGAGTAGCCGATGTAAGAACGCTAGGTAGGTGTTTCTGAAGAAGGTGAAGGGCCCTCTGTGTGCTGACTGACCTAGGATGCAGGGTCCTTTAGATTAAGGGAATACGCGTGAGAGGATATCTCAGTTTTGTTCTGAATCAGAACTTTTTCTCTGCAGCTGCTAGGAGTCAAACCTTGGTAATGAATGCCTTTTTAGAGAGGTAGCATTCTGGTTGCTAATGGTTACAGTTGGTGACTTGTGGGCAAGGCTACAGACAATAAATGCCTGAGCTGTGTGTAACCCTTTCCCTTAAGACTCTATAAAGTAGAGGGTGTAGATGGCACAGCATAGACCCCGCACCTGGTGAGTAGGGCTGTGTGCTTTGTCCTGTCACTGAACTGGACACCTTTTTTAGAATGAGGAACCAGACAGCATAGTTTGAGACCCCTGCCCAGATCCCAGACATGGTCACTTAATTGCTTGTAGCTTGGGGAGTCCTCAAATGGGAACACCAATTATCAGACCCTTTACATGACTTAAACCTGACAGGTACCCTTCTACTACTTCCTGTGAGGAAAAGCTACATCTCCATCAACCAAGAAAACTATTTGTATTTCATGACCTGGCCTCTTTCAGCCTTGATGGTAATGAGGTGGCCACATTCTTGGGCCCATCTACTGTCCCCACCCATGGGCCTGCCCTCTCTCTGGATCAGGTTGGGGCTGTTTGGGGTGGCTGCAGTTCCCTCCCAGCTCCCCCCACACCCTGAGAGTTTAAGGGTCCAAGATCTTGGATTAAAGTTTCTGTGGTCCGTTTATAGATTGGGGGTAGGTCAAAGAGAACATCTGAAAGAGCTGTAGGCTCCTGCTGCACATGGAGTCAGCTGTAGTTTGCCTGGAGCATTGTGTCTTCGTGTTCAGGTCTGATAGGTAGAAGCAGGAAGGCAGTATTCTTTTGCTTCCTCTCCCTTTTCCTATAGCTAGGCTCTTGAGTGAGAGGCAGCAGCTATCCGGTGCTGTCCAGCATGTATGGTGAGGTATGTGGTAGGGCAGTCAGGGGAACTGCTATTCTGTCTGGGCCTTTCCACAGTGCACACTGTCCACAGCTGGTCCTGCAGGCATCAGAGCCTGGCACTAGTGATGAGGTGCCAGCAGATGACAGAATACATAATCTGTATTCTGCCACCCAGTCTGCGTGAGCCTGGCTGCTGGAGGTGCTTTGAGTTTAGGAATCCCAGTGTATCTTCCTAGGGTGGGCCTACCCAGCCTGTGGGTTCAAGAGTGGTTCAGGAACTTTCCTTTTTTGGGGGGGGGGGGATGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGACCGCGAACTCAGAAATCCGCCTGCCTCTGTCTCCCATGTGCTGAGATTAAAGGCGTGCGCCACCACCGCCTGGCTGGTCAGGGACTTTCCATGTCTGCTTTAGTGGACCTCAGTGTCCATCCTCCATAAGCTGCCCAAAGAGCACTGCCTTGTAATATATGGCTGTGCTATCGGGATTCCTTCTAACAGGGTTGGGTAGGGAGGGAGGATGTGCCTGCTCTTGTCTACCCAGAGTTGACAGTACATCGATGGGTTAAGTACAGTCATTGCAGGTTACTCCTGTTGCCAAAAGTCTTCAGTGGGTGACAGACACAGAGGAACATGGCAAAATCCTTCATACAAATGCAAGCTAGCAGTTTGGGGTCTCAGAGGAGCCAGAGAGAGTTAACAAGGCTTCCTCATGGAAGGGCCTACTGTGCCGTAGGGCTCCGGAAGTTGTTCTGCACTTCTGACTGAAGAACCTGTTTGTTTGTGAGGTGTGAGTTGGGCAGGGTGTGGGGAAGATGGTCATATAGCTGACTACATGCATTCAACAAGCCCTAATTAGGCTGTAGTCTGTACCATGCACAGGAACGTGTTTCTGTTCAGGCTACTACAGGTGCCTGGAGAGGGGCTTATATGTGTTGTGGGAAGGGCCTCAGGGTCCTGCTATAGGACCCAGATTTAGGTAGAGAGTAGATAGCAAGCTTCTTAGAGGAGGCACTGGACTGAAACCTGAAATTCAAATCCTGGGCTGTCACAGGACAGGAAGGGCCTCAGGAGAGATGCCCACTGGGCTTCTGCCTTTATGAGGCAGTTGGGAGTCTCAGGAAAGGAGCTCTTTAGAGTGTAGAATCCTCAGAAGGCTTTCAAGCTAGTAGGAAATGGGAATTAACATTGCACAGGATGAGGGGTACTGGCAGTGGAAGGTGACCATCCTTTCTGTGCCAACTCCCCTGGGTAGAGAGGCTGCTAAAAACAACCCTCAGAAGGCTACTAGCCCTCCTGGCCTTGTGGGAAGGCTGCAGAGCAGAGGCTGCAGTCCCTGTCTGTGTACCCACCCCCCTTTCCTTCCTCCGCATGCTGCCTCGTGGCAAGAACTGGGTGAGCCCTGGGTGCCAGCCAGGGCTGGGCCCAGATGGTGGTTTAGGGCCGAGCACAAGGAGGCTCTTGCCGGAGTGGGTGGTGGGAGGAGCCACAACTGAGGGGGGGGTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTATCTCTGTGTGTTTTCATAGTACATGCACTGTCCAGGCCTGTTGAGGGTGGGACCTGAGGAACCCCATAGGGGTTTTATCTTGGTGGGACAGGTGTGTGGGTGTGTGTAGGTAGGCATGACACCAGCAGACACCTGTCCCTTCCTTGTCTGTTGCCTGTCGCCTGCAGGGTGTTGGTGGTAGGAGGAGGGGAGCAGGAAGCTGAGGTTTTTGTGAGTCATAATAGGCCCCTGCACCCCACCACCTCCTGCTTAGCAGCAACCTTCCTAGTGTTGACAGTCGTGGTGCTTGCTTCATGGTTCTGGAGGGATGCATGGTCTCCCATGGTTGCAGCTGAGTTCCTTTGCTTTTAGGGGACCTGGGAATTGTGTATTGTTGTGTTGAGCTTAGTGGTTCAGTATGACTGTGTTCAAGTAGACCAGGCTGGGTGGATGTGAGGCCGTAGCTCAGCAAGCAGGCCCATTGCACACGGAAGTTTTCTGGAACTTAGGCTGAGCAGGGGGATCCATGACAAGACCTTTTATGTAGGGTACCATCCCTTCACCGTCTGCTTCTGCTTCTTCCACTGGTGGGAGCATCTGTATTGAGGCTGGTCCATGGGAAGGATGGGAGAGTGCTGTGCCCTGAGGATCTTGAAGCTGTATGTGTGAGATGCAGAAGTGAGGAGGCCTGTTTTCCTTTGCATACCACAGTGGTTCTCAGCCTGTGGGCTGGGATCTCTTTGGGGTCAGATATCCTGTATATTAGATAATCACATTGCAGTTCATAACAGTAGCAAAATTACAGCTATGAAGTAGCAACAAAACAATTGTATGGTTGGAGGTCACCACAGCATGGGGAACATGAGGAATATTAAGATCGCAACATTAGGAAGGTTGAGAAGCCTACCAGACTCCATCTCATGTGTGTATGTGAGGCCAAGGAAGCCATCACACATCCTCGCCGCTGCCCTCACTTTGCCTCCTGATTTAATGGTGTAGATGAGCCCAGGCCAGGACCTTCACTCCACCTACATAGACTGTACTTAGAAGTACTTCCCTTGCTGGTACATACTGAGGGAGTCTGGGAGCTTCAGGGCTCAGAGGGGCAGCATATACTTGCTAAACTCTTTGTTTTTGGAGATTTGTGTTCTGGGAGGAACTGTCTCTGAGGTACTGTGGATAGGTAGCAATTTGGATCCATGGTTGGTGTTTCCACCCCCATCATAAGAGGCGCTAAGGCTTGAGTTCCACACATGGGCCCAGGGCAGACAGGTGACAGGGATCACCAACATAGCCAAATGTGCCCTGTATGTTTAGACACACCCACAATTTGCATGGCGCTCACTGTAGCAGGGGTTGAGGCTAACGCTGCAGGTTGGCAGTCAAGGAAGATATTGAGTTCTCTAAAACTCTTCCTCCTCCCTGAAAGGTCCCTGTACAGTGAAAGGTCAGCTTGGGCTGGTAGGTGAGAGGAAGGATCTGGAGGCGTCTCTATCTTCCTTATGGTGGCCTTGGGGTCTGTACCTATCCAATGGCTTATCTACCCAGAAGTCTATTTAGAGAAATAGTAGATCTGGGAGCTTAGGTTGGTCTGGTGCCAGATGAGAAGAGGTTGTTTCCATCCTGCACCAATCCTGGCAGTGTGAGGGTTGGGGTGTGTGGGGAATGGTGCTCTGACCACCTGCTCTTGTTCTCAG
Seq C2 exon
GGAGTGGGGAAGGCCAGGGCCAGATCCTGCAGCGCTTCCCGGAGAAGGACTGGGAGGACAACCCTTTCCCCCAGGGCATTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529-Sbf1:NM_001081030:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(36.5=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: