HsaINT0145129 @ hg38
Intron Retention
Gene
ENSG00000100241 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr22:50468376-50475024:-
Coord C1 exon
chr22:50474786-50475024
Coord A exon
chr22:50468462-50474785
Coord C2 exon
chr22:50468376-50468461
Length
6324 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCCCCTGTTCTTGTCCTCAGGGA
3' ss Score
12.59
Exon sequences
Seq C1 exon
CTGGCTGGGAAGATGGCGGCGGGAACCTGGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGAGCGAACCAGGGGTGTCCGGGGTGCGCGGTCCAGGGCCGGGGCCGGGCCATGAGCGCGCCGTCCTCGAGTCCCCGAGCCGCGGAGCCCGCCCGCGCCCCTCGGGCCGCCCCGCGTCCCTCGCCATGGCGCGGCTCGCGGACTACTTCGTGCTGGTGGCGTTCGGGCCGCACCCGCGCG
Seq A exon
GTGAGTGCCGAGGCCAAGCGCTGAGGGCCGGGGGCCGAGGGTCGAGTGCTGAGGGCCAGGGGCTGGGTCTGAGGGTCGAGGGCCGGGGGCTGGGGGCCGAGGGCTGGGGGCTGGGTCGGGAGGCCGAGGACTGAGGGCCGGGCGCTGAGGGCCGAGGACCGGGGGCTGGGCGCTGAGGGCCGGGGTCGGGGGAGCCGAGGACTGAGGGCCGGGGCCGGGGGCCGGGCGGGGACTGAAGGCCAGGGCCGACCGGACAGCCCGTGGGGAGAATGGGCGTCCGCTGGGGGCGGCGTGGCCGCGCGGGCCTGGTGGCGGCAGGGAGAGAAGGCTGGGCCCGGCCTGCCCGGCCTCCTTGGGGTGGGACGGGCTCTCTCCTTGGCCAGCTGCGGGCGGCTGTGGCTCTAGTGGCTCCAGGGGCGCGGACCCGCGGCTCGCCAGCCCGCCTCTGACCTTGGTGCTCCGTCTGAAGCCCCCGGCGGTCTTGGCGGGGTGCAAAGAGGGGGTGGAGTTCGGGTTTGGTGCATGGAGAAGCGGTGTTTGATTTGAAACTGGGAGGATTTGAGGAGGAAGCGTCGAGAGTAGAGAGAAGAGCATTCCTGGCGACTCGCCTGACGGTCCAGGCCCTGCACGCCAAGCCCTGGGTGGGGTATCAGCGTGGCGGTCGGTGCCCATGCCCAGGAGGTCTGTGTGTGGGGTCAGCGCCCGTGTCTGAGAGCTCTTCAGCCCAGGAGGTAGGAGAAAACGGAGCCTGACGATGACATCAGCAACAGCCTGGAGACAGCAGCGTTGGCGAGCGTGCTTGGTGTGCCAGGCCCCGCACAGCCCTTTGTGTACATGATCTCACCTCTTCCTCCCAGCAGCCCACCGGGGTTGCCCTGGTGTTGCCCCCATCTGTAGAGAAGTTAGGCGCGGATAAGCTGACTGCCTGGCCTGAGCCGGCTCAGAGAGGCTGGGACTGGCACTCAGGCTGTCAGATCCCAGCTGCAGACTGGCAGTGTGTGGGGATGGCTGTGTGGTCAGGCAGGGGCTGGATCTTGAGCCTGGAGGTGGGATTGAGCTTGCCTTCCCAGTTACCCTGTTTTTTGTCAGTCCAGTTGTCACTGTCCCCACCAAGGACCTGGAGTTCTCTCTTTTTTGTGTTTCTTCTGCTGGACACCCCCCTACACTTCCTGAAGCCTCTTTAGCATCTTCTTCGTCTCCAGCCCCTCCTCAGTGCCCTCTTACTCAGCACACACTCCTCTCTGCTCATGTCTATCCAAGTGTGTGTCTTATGGCACCGTCAGTCATGAGCATCTGTCTTTTTCTTTAGAGAGGGAGTTCTCGCTTGCTAGGACCACATAGTCCTCATCCCCACTGTGCAGGTTGGCTGTCAATGTTGTCTTGACCCACAGAGGGAGCTGTCTGCACCGAGGCACCTATGAGGGGCATGGAGGAGGCCTTACCACCTGGGGCAGAGGGTGCCTGAGGATCCAGGGAAGCAAGGCTGGCTGAGGGCTGTCTTGGCGTGAGGGGCCTTGGGCTGAGGGCTGGGGCGGGGGCTACAGGAACAGCTGATAATGACCCTGATGATCCTGAGGGCAGTGTGGAGAGGGTTTGGGTTGGTAGAGACTGCAGGCAAAGGCCAGGTGGGAGGCGTGGTGGCCGTGGGGTGAGGAGTTGAAGGTAGGCAGAGAGAAGAGGCAGAGTGGGCTCCACAACAAGCTGGCTGTGACGTGTGTGCTCACTGCTGGAGCCACACGTAGTGCAGGCACCTGTTTGTGTGTGTCCTTTGCGCAGGACAGGGTAGAAGGCTGGAGCCCAAGGTGCCCCCCCTTCCCCTAAGTGACCGGAAGGAGTGATAAGTGGTCCACTGCAGTAGGGTTGGAGGACCGTGGAGCCCTGTACCCACTACCTTCTGGGGTTGAGCTGGTCAGCTGCTTGCTGGCCTTGCAGCCCCAGGCACCCCTTAGAAGGACTTGTTCATTCTTGAGGGGAACAAGGCTATAGACTGGGACCCTGGTCATGGGCTGAGGGCAGAGCCAGGTACCAGGGCCGGTGGGAGCTGGGGGAAGAAGCAGAGGAGTGTGGCGTGGGGGTCACTTGTCTCTGCTTTGCCCCTTGATAGCCTTGTGACTTCGAGCCAGTTGTTTGGCTCTCTGTGCCTCAGTTTCCTCATCTGGGGATGGAGTGAGTCATGCTAACCTCCCAGGCTGCCGTGAGGATGCAGCGAATGCACAGGTGTGAAGCAGTAGCACACAGGAGGCCCTGGAAATGATGAGTTTCTTTCATTAGTGACTGAGCAGCAGGTGTGTGAACTCTCTAGGCACAGACACAACAGGCACTTCTGAGTGGGTAGAGGATCCTCTCTGTTCTGTCAGGCTAGGACTTCAGGGCGGGATGCAGGGTCTCTTGGGTTGGGGATTAGGATTGGCGGATAGCTTGTCTTGGCCTGGATCTGGACATCCTGTCTGGAGCTGCTGGGTGCAGCACCAGGGTGCTGAGGGTGCATGAGTCCTGCCTGAGGCAGCATCCCAGTTGCTAGTGGTTACCAGCTGGAAACCTCTCAGGAAAGGTGGGGAGGGGCCCTGAGAAGGTAAATGCCTGTGCTGGCCGTGACCCTTTCACCTCAGAGAGTGATGGTGGCCAGCGCTGGCCCATCTGCAGGCCCCTCACCTGGTGAGTCAGGGATCACCTTCTGTGCTCTGGGGCAGGCATCAGGACTAGACAGACTGCCTCTGCCCGGCTCTTGGCCTGATCACAGCGTGGCCAGTGCTGAGGTGTCTTTGAGAACAGGAGACACATTTGATCTGGCCCTGACCTGGCCATCGGCCTTCCATCTCCAGCAGCTGAGTGTGCATCTGCCTGGGAGGAGGGGCTGGACCCCTTGGATCTGAGAAAAAGACCTTTCACCCTATGGCCTCGCCTCTCCTCCTGACTGTGATGTGCTGGCTGCATTCTTGAGCCCCATCTACTGTCCCCACCCACGTTCCTGCCCTCCCTCTGGAGCGGGTTGGGGCTGTTTGGGATGGCCTCAACTGCCTCCCAGCCTCCACCCTGGGAGCCGGAAGGGGTCCAAGGCCTTGGGTCAGAACTGCTCAGGTCTGATGGGCAGGGGAGGTTGGGGGGGATGGCTGTGGAAGCTGCAGGGGCCCTGCGCATGGCCTGCTGCTGCGGCCGAGGGAGCCATGTGCACGTTGGGGTTGGGTGGGTGGCGTAGCAGGAAGGTGCTGTCCTTCCTTCTTTTCTCTTTTCCTATAGCTGGGTTCCCCACAAGCAGCAGAGCCGGCCAGGGCTGGTCTTCGTGCACTGTGGGGAGTGTGGTGGGGAAACAGGAGAGGCTGCCATCCTTCTTTGCCTCCCCACAGCACACGCTGGCCTGGGCCAGCCCTCCAGGCGTCAGAGCCTGGCACTGATGATGGGGTGCTGCCAGCAGATGACAGAACGCGAGGTCTGTGTTCGCCTGCCCGCCCGCCCGCCTTTCAGGCCTGCCGTCTGCGTGGGGCTGGCCGCAGGGACATTGGTGCAGGAGGGAGTGCTCTTTGAGGGGCTTTCAGGACAGAAGCCCCAGTGTTGTCCTTAGGTGGCCCCCTCAGCCCCATGTTCAGAGGTGGAGGTGGCAAGGAAACCTTGGTGCCCAGTGCCACCCAGCACACCGTTTGGATTCGTCCTGTTGCCAAGGGGAGGAGTGGGGAGGGCACCCTCCCTCCTGTGTATTCTGAGGTAAAGGCAGCACTCTGATGGGCAAGGAGCTCAGCTGCTGGAGGTCACTCCTATGGCAATAGAGCTTCAGTGGGTGGGGGACCCTGGGAAGATGTGGCAAAACCCCCCACATCCCCCTGGAGGCCAAGATGTGGCCTGGCCCCGGACAGCACAGAGCTGAGGTGCAGGCTGGGACCTCAGAAGGGTGAGGAGGAGAGCTGCTCACAGCTGAGGGCTGCAGGGCCCTCCATGGCCTGCCTTTCCAGGGGCCAGCTGTGTTCTGTCATTCCCTGGGGCTCCGGAAGGTGCCCTGTACTTCCGACTGAGGAACCTGTTTGCTTGTTGGGTGTGGGGAGGATGGTTGTGTAGCCGACTGTACGTGTTCTACAAGCCCTAATTAGCCTGTGGTCCGTCCCAGCCAAGCCAACAGGTGCACTAGCAGTCACTGGGGTGTGGTGGAGGGAGGTCGGTCCTAGGGTCCCTGTAGGCCCCAGGCTGGGGCAGAGTTTCCCAGGGGAGGGGGTGCTCTGTGGGCTGAGACCTGAAGGGCCAGTCTGGGGCTGTCATGGCACAGAGGAGCTCAGGGAGAGGTGCCTGCTTGGCCTGGCCCACTTGGGCCATTGGGCCAGCCCAAGGAGAGTGGAGCTCAGGGCTGGCTCTTTGGAGGGTAGAGCCCTGCAGAGGACTTAAGGCTGAGTGAGAGTTGATGCTTCACAAGACTAGCGGGGGGTGGAGAGGGTCAAGGTAGATGGTGACCTGCCACTCTGCCCATCCTCCTGGGGAAGGCTGCCTTCCCTTCCTGGCCTTGGGGAGGCTGCAGTGCAGAGACTGCTGTCCCTGTTCATAAACCCCTCTTCCTTCCTCCACCTGCTGCCTCGTGGCAAGAACTGGGTGAGCCCTGGGTGCCAGCCAGGGCTGGGCCCAGATGGTGGTTTGGGGCCAAACACAAGGAGGCCTTTGGGGGAGTGGGCGGGGTGGGGGAGGAGCCGCAGCTCAGGGCCTGCGCCTGAGTGAGCTGTCCTTGGGGGTGTGGAGGTAGGTGTGGCACCCGCAGACACCTGGGCCCCCACCCGTCTGCCGCCTGTCCTCTGCAGGGTGTCGGTGGGAGGGGGAGGGGAGCAGGAAGCTGAGGTTTTGTGAGTCAGAATCGGCCCCTCACCGCCCCACCATCTCCCACTTAGCAGCAGCCTGCCCACTGCCGACTTCCTTGGCTCTGCCCCTGTAACCCTGGAGGGCAGATGGTCTCCCCGCCTGTAGGGGACCCGTGGAGTGTGTGCCATTGGGCTGCCAGAGTTGCTCATCTGTTCCCAGGAGGACCAGGCATGCTGGATGTGGGGCTGCAGCTTCTTGGGGGCCGGGGTGGGGGGTCCATGAGGGGCTCTGTGTTGAGCATGACCCCCGCCTTGCCCATCTGGCTCTGCTGCTTCCGCCAGGTGGGTGGCGGTGTAGAGGCCCGTCCAGACAGAGGATGGGCCCTGGGGACCTGCGGTTTGTGTGGAGGAGAAGGCAGGCAGGCTTTCGTCTTTCCTGCTGCACCTGCTCCATCCTCCACAAGCCCTGGGAGGCCTGCGGAGCCGTCCTGCTGCGGGAGCCACACCCTGAGTGTCCCACTGTGGTCCCCACCGGGCTTCCTGGTTTGGCTCTCCAGGGGTGAGCCACAGGCAGGGACCTTTACCCCACCGGTGTGGACTGGGCCTGGAAACAGGGCCCTGGATGTGGTAGTTCTGGGGCCCCACGGAGAGGAGGGGTCTGGTGGGGAGACATAGGCCTCTTGGCTCTCCCTGCCCTGAAAGCCCTCCTCCTGGCCCAGGGGAGCTTAGGCTGTGCTCAGCACCCATCCTATGGCCTTTGTACAGGGAGATTTGGAGACAGGGAGCAGGCCTGGGTGTGACCACCGTCCCACTCTCCTCTGAGAGCTGCTGGGGTCCAGGTGCTCAGGAAGCCATCTGGGCATCCTTCGGTGGTCGTCCTGGACCAAGTCTCCATCCTTCCCGTCTAGCTGCTGCCCCTCTAGGTCCTGCTGGCTGTGGGGCTGGTGTTCTAACAGGGAGCTGCCAAACCCCATCTTCTGGGACCTGTACTGGGGACTTGTCTGTCTCTGAAGCAGCTGGGATAGGGAAGAGTTTGGGGCTGTGGGCGCAGGGGGTGTCCTCTAGCCTTGTGGGGCTGAGGCTTCTTGAACCCCACACAGACAGCAGGTTTGAGTCCTCCACACCCCCGGCTGGGTCCAGGGCTGGTGGGTGACAGGGAGCTCTGGGGGATGCCCACTGTTGGGGGGCCGAGAGCCTAAGTGGGGGCCTGGCGGTGGTGGCAGATGCTGTGGGGGCCTGTGGAACAGTCCCGAAGTGTTGACCTTCGATGGAGGGCTGCTGTGCTGTGTGAAGCTGGGCTGGTCAGGCTGAAGGAGGTCTCTGGGGTGGGATCGGAGAATGGGGTGTAGCGGCAGGGGCTTCTCTACCCTCAGGTGGCCCTGGGGTCTGCAGCTGTCAAGCAGACTCTCCATACGGAGCTATTTTTAGGGAGCTGTGGCTGATCTGGTGCCAGATGAGGGCCCAGTGGGTGGGAATGTTTCCACCCTGGGATCCTCAAGCCTCCTGGTGGGTGGGGGGCGGGTTGGGTGCTCTGACCCCCTGTTCTTGTCCTCAG
Seq C2 exon
GGAGTGGGGAAGGCCAGGGCCAGATTCTGCAGCGCTTCCCAGAGAAGGACTGGGAGGACAACCCATTCCCCCAGGGCATCGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100241:ENST00000380817:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.655
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(36.5=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development