HsaINT0145129 @ hg19
Intron Retention
Gene
ENSG00000100241 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:10542]
Coordinates
chr22:50906805-50913464:-
Coord C1 exon
chr22:50913215-50913464
Coord A exon
chr22:50906891-50913214
Coord C2 exon
chr22:50906805-50906890
Length
6324 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCCCCTGTTCTTGTCCTCAGGGA
3' ss Score
12.59
Exon sequences
Seq C1 exon
GGGCGGGCCGGCTGGCTGGGAAGATGGCGGCGGGAACCTGGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGAGCGAACCAGGGGTGTCCGGGGTGCGCGGTCCAGGGCCGGGGCCGGGCCATGAGCGCGCCGTCCTCGAGTCCCCGAGCCGCGGAGCCCGCCCGCGCCCCTCGGGCCGCCCCGCGTCCCTCGCCATGGCGCGGCTCGCGGACTACTTCGTGCTGGTGGCGTTCGGGCCGCACCCGCGCG
Seq A exon
GTGAGTGCCGAGGCCAAGCGCTGAGGGCCGGGGGCCGAGGGTCGAGTGCTGAGGGCCAGGGGCTGGGTCTGAGGGTCGAGGGCCGGGGGCTGGGGGCCGAGGGCTGGGGGCTGGGTCGGGAGGCCGAGGACTGAGGGCCGGGCGCTGAGGGCCGAGGACCGGGGGCTGGGCGCTGAGGGCCGGGGTCGGGGGAGCCGAGGACTGAGGGCCGGGGCCGGGGGCCGGGCGGGGACTGAAGGCCAGGGCCGACCGGACAGCCCGTGGGGAGAATGGGCGTCCGCTGGGGGCGGCGTGGCCGCGCGGGCCTGGTGGCGGCAGGGAGAGAAGGCTGGGCCCGGCCTGCCCGGCCTCCTTGGGGTGGGACGGGCTCTCTCCTTGGCCAGCTGCGGGCGGCTGTGGCTCTAGTGGCTCCAGGGGCGCGGACCCGCGGCTCGCCAGCCCGCCTCTGACCTTGGTGCTCCGTCTGAAGCCCCCGGCGGTCTTGGCGGGGTGCAAAGAGGGGGTGGAGTTCGGGTTTGGTGCATGGAGAAGCGGTGTTTGATTTGAAACTGGGAGGATTTGAGGAGGAAGCGTCGAGAGTAGAGAGAAGAGCATTCCTGGCGACTCGCCTGACGGTCCAGGCCCTGCACGCCAAGCCCTGGGTGGGGTATCAGCGTGGCGGTCGGTGCCCATGCCCAGGAGGTCTGTGTGTGGGGTCAGCGCCCGTGTCTGAGAGCTCTTCAGCCCAGGAGGTAGGAGAAAACGGAGCCTGACGATGACATCAGCAACAGCCTGGAGACAGCAGCGTTGGCGAGCGTGCTTGGTGTGCCAGGCCCCGCACAGCCCTTTGTGTACATGATCTCACCTCTTCCTCCCAGCAGCCCACCGGGGTTGCCCTGGTGTTGCCCCCATCTGTAGAGAAGTTAGGCGCGGATAAGCTGACTGCCTGGCCTGAGCCGGCTCAGAGAGGCTGGGACTGGCACTCAGGCTGTCAGATCCCAGCTGCAGACTGGCAGTGTGTGGGGATGGCTGTGTGGTCAGGCAGGGGCTGGATCTTGAGCCTGGAGGTGGGATTGAGCTTGCCTTCCCAGTTACCCTGTTTTTTGTCAGTCCAGTTGTCACTGTCCCCACCAAGGACCTGGAGTTCTCTCTTTTTTGTGTTTCTTCTGCTGGACACCCCCCTACACTTCCTGAAGCCTCTTTAGCATCTTCTTCGTCTCCAGCCCCTCCTCAGTGCCCTCTTACTCAGCACACACTCCTCTCTGCTCATGTCTATCCAAGTGTGTGTCTTATGGCACCGTCAGTCATGAGCATCTGTCTTTTTCTTTAGAGAGGGAGTTCTCGCTTGCTAGGACCACATAGTCCTCATCCCCACTGTGCAGGTTGGCTGTCAATGTTGTCTTGACCCACAGAGGGAGCTGTCTGCACCGAGGCACCTATGAGGGGCATGGAGGAGGCCTTACCACCTGGGGCAGAGGGTGCCTGAGGATCCAGGGAAGCAAGGCTGGCTGAGGGCTGTCTTGGCGTGAGGGGCCTTGGGCTGAGGGCTGGGGCGGGGGCTACAGGAACAGCTGATAATGACCCTGATGATCCTGAGGGCAGTGTGGAGAGGGTTTGGGTTGGTAGAGACTGCAGGCAAAGGCCAGGTGGGAGGCGTGGTGGCCGTGGGGTGAGGAGTTGAAGGTAGGCAGAGAGAAGAGGCAGAGTGGGCTCCACAACAAGCTGGCTGTGACGTGTGTGCTCACTGCTGGAGCCACACGTAGTGCAGGCACCTGTTTGTGTGTGTCCTTTGCGCAGGACAGGGTAGAAGGCTGGAGCCCAAGGTGCCCCCCCTTCCCCTAAGTGACCGGAAGGAGTGATAAGTGGTCCACTGCAGTAGGGTTGGAGGACCGTGGAGCCCTGTACCCACTACCTTCTGGGGTTGAGCTGGTCAGCTGCTTGCTGGCCTTGCAGCCCCAGGCACCCCTTAGAAGGACTTGTTCATTCTTGAGGGGAACAAGGCTATAGACTGGGACCCTGGTCATGGGCTGAGGGCAGAGCCAGGTACCAGGGCCGGTGGGAGCTGGGGGAAGAAGCAGAGGAGTGTGGCGTGGGGGTCACTTGTCTCTGCTTTGCCCCTTGATAGCCTTGTGACTTCGAGCCAGTTGTTTGGCTCTCTGTGCCTCAGTTTCCTCATCTGGGGATGGAGTGAGTCATGCTAACCTCCCAGGCTGCCGTGAGGATGCAGCGAATGCACAGGTGTGAAGCAGTAGCACACAGGAGGCCCTGGAAATGATGAGTTTCTTTCATTAGTGACTGAGCAGCAGGTGTGTGAACTCTCTAGGCACAGACACAACAGGCACTTCTGAGTGGGTAGAGGATCCTCTCTGTTCTGTCAGGCTAGGACTTCAGGGCGGGATGCAGGGTCTCTTGGGTTGGGGATTAGGATTGGCGGATAGCTTGTCTTGGCCTGGATCTGGACATCCTGTCTGGAGCTGCTGGGTGCAGCACCAGGGTGCTGAGGGTGCATGAGTCCTGCCTGAGGCAGCATCCCAGTTGCTAGTGGTTACCAGCTGGAAACCTCTCAGGAAAGGTGGGGAGGGGCCCTGAGAAGGTAAATGCCTGTGCTGGCCGTGACCCTTTCACCTCAGAGAGTGATGGTGGCCAGCGCTGGCCCATCTGCAGGCCCCTCACCTGGTGAGTCAGGGATCACCTTCTGTGCTCTGGGGCAGGCATCAGGACTAGACAGACTGCCTCTGCCCGGCTCTTGGCCTGATCACAGCGTGGCCAGTGCTGAGGTGTCTTTGAGAACAGGAGACACATTTGATCTGGCCCTGACCTGGCCATCGGCCTTCCATCTCCAGCAGCTGAGTGTGCATCTGCCTGGGAGGAGGGGCTGGACCCCTTGGATCTGAGAAAAAGACCTTTCACCCTATGGCCTCGCCTCTCCTCCTGACTGTGATGTGCTGGCTGCATTCTTGAGCCCCATCTACTGTCCCCACCCACGTTCCTGCCCTCCCTCTGGAGCGGGTTGGGGCTGTTTGGGATGGCCTCAACTGCCTCCCAGCCTCCACCCTGGGAGCCGGAAGGGGTCCAAGGCCTTGGGTCAGAACTGCTCAGGTCTGATGGGCAGGGGAGGTTGGGGGGGATGGCTGTGGAAGCTGCAGGGGCCCTGCGCATGGCCTGCTGCTGCGGCCGAGGGAGCCATGTGCACGTTGGGGTTGGGTGGGTGGCGTAGCAGGAAGGTGCTGTCCTTCCTTCTTTTCTCTTTTCCTATAGCTGGGTTCCCCACAAGCAGCAGAGCCGGCCAGGGCTGGTCTTCGTGCACTGTGGGGAGTGTGGTGGGGAAACAGGAGAGGCTGCCATCCTTCTTTGCCTCCCCACAGCACACGCTGGCCTGGGCCAGCCCTCCAGGCGTCAGAGCCTGGCACTGATGATGGGGTGCTGCCAGCAGATGACAGAACGCGAGGTCTGTGTTCGCCTGCCCGCCCGCCCGCCTTTCAGGCCTGCCGTCTGCGTGGGGCTGGCCGCAGGGACATTGGTGCAGGAGGGAGTGCTCTTTGAGGGGCTTTCAGGACAGAAGCCCCAGTGTTGTCCTTAGGTGGCCCCCTCAGCCCCATGTTCAGAGGTGGAGGTGGCAAGGAAACCTTGGTGCCCAGTGCCACCCAGCACACCGTTTGGATTCGTCCTGTTGCCAAGGGGAGGAGTGGGGAGGGCACCCTCCCTCCTGTGTATTCTGAGGTAAAGGCAGCACTCTGATGGGCAAGGAGCTCAGCTGCTGGAGGTCACTCCTATGGCAATAGAGCTTCAGTGGGTGGGGGACCCTGGGAAGATGTGGCAAAACCCCCCACATCCCCCTGGAGGCCAAGATGTGGCCTGGCCCCGGACAGCACAGAGCTGAGGTGCAGGCTGGGACCTCAGAAGGGTGAGGAGGAGAGCTGCTCACAGCTGAGGGCTGCAGGGCCCTCCATGGCCTGCCTTTCCAGGGGCCAGCTGTGTTCTGTCATTCCCTGGGGCTCCGGAAGGTGCCCTGTACTTCCGACTGAGGAACCTGTTTGCTTGTTGGGTGTGGGGAGGATGGTTGTGTAGCCGACTGTACGTGTTCTACAAGCCCTAATTAGCCTGTGGTCCGTCCCAGCCAAGCCAACAGGTGCACTAGCAGTCACTGGGGTGTGGTGGAGGGAGGTCGGTCCTAGGGTCCCTGTAGGCCCCAGGCTGGGGCAGAGTTTCCCAGGGGAGGGGGTGCTCTGTGGGCTGAGACCTGAAGGGCCAGTCTGGGGCTGTCATGGCACAGAGGAGCTCAGGGAGAGGTGCCTGCTTGGCCTGGCCCACTTGGGCCATTGGGCCAGCCCAAGGAGAGTGGAGCTCAGGGCTGGCTCTTTGGAGGGTAGAGCCCTGCAGAGGACTTAAGGCTGAGTGAGAGTTGATGCTTCACAAGACTAGCGGGGGGTGGAGAGGGTCAAGGTAGATGGTGACCTGCCACTCTGCCCATCCTCCTGGGGAAGGCTGCCTTCCCTTCCTGGCCTTGGGGAGGCTGCAGTGCAGAGACTGCTGTCCCTGTTCATAAACCCCTCTTCCTTCCTCCACCTGCTGCCTCGTGGCAAGAACTGGGTGAGCCCTGGGTGCCAGCCAGGGCTGGGCCCAGATGGTGGTTTGGGGCCAAACACAAGGAGGCCTTTGGGGGAGTGGGCGGGGTGGGGGAGGAGCCGCAGCTCAGGGCCTGCGCCTGAGTGAGCTGTCCTTGGGGGTGTGGAGGTAGGTGTGGCACCCGCAGACACCTGGGCCCCCACCCGTCTGCCGCCTGTCCTCTGCAGGGTGTCGGTGGGAGGGGGAGGGGAGCAGGAAGCTGAGGTTTTGTGAGTCAGAATCGGCCCCTCACCGCCCCACCATCTCCCACTTAGCAGCAGCCTGCCCACTGCCGACTTCCTTGGCTCTGCCCCTGTAACCCTGGAGGGCAGATGGTCTCCCCGCCTGTAGGGGACCCGTGGAGTGTGTGCCATTGGGCTGCCAGAGTTGCTCATCTGTTCCCAGGAGGACCAGGCATGCTGGATGTGGGGCTGCAGCTTCTTGGGGGCCGGGGTGGGGGGTCCATGAGGGGCTCTGTGTTGAGCATGACCCCCGCCTTGCCCATCTGGCTCTGCTGCTTCCGCCAGGTGGGTGGCGGTGTAGAGGCCCGTCCAGACAGAGGATGGGCCCTGGGGACCTGCGGTTTGTGTGGAGGAGAAGGCAGGCAGGCTTTCGTCTTTCCTGCTGCACCTGCTCCATCCTCCACAAGCCCTGGGAGGCCTGCGGAGCCGTCCTGCTGCGGGAGCCACACCCTGAGTGTCCCACTGTGGTCCCCACCGGGCTTCCTGGTTTGGCTCTCCAGGGGTGAGCCACAGGCAGGGACCTTTACCCCACCGGTGTGGACTGGGCCTGGAAACAGGGCCCTGGATGTGGTAGTTCTGGGGCCCCACGGAGAGGAGGGGTCTGGTGGGGAGACATAGGCCTCTTGGCTCTCCCTGCCCTGAAAGCCCTCCTCCTGGCCCAGGGGAGCTTAGGCTGTGCTCAGCACCCATCCTATGGCCTTTGTACAGGGAGATTTGGAGACAGGGAGCAGGCCTGGGTGTGACCACCGTCCCACTCTCCTCTGAGAGCTGCTGGGGTCCAGGTGCTCAGGAAGCCATCTGGGCATCCTTCGGTGGTCGTCCTGGACCAAGTCTCCATCCTTCCCGTCTAGCTGCTGCCCCTCTAGGTCCTGCTGGCTGTGGGGCTGGTGTTCTAACAGGGAGCTGCCAAACCCCATCTTCTGGGACCTGTACTGGGGACTTGTCTGTCTCTGAAGCAGCTGGGATAGGGAAGAGTTTGGGGCTGTGGGCGCAGGGGGTGTCCTCTAGCCTTGTGGGGCTGAGGCTTCTTGAACCCCACACAGACAGCAGGTTTGAGTCCTCCACACCCCCGGCTGGGTCCAGGGCTGGTGGGTGACAGGGAGCTCTGGGGGATGCCCACTGTTGGGGGGCCGAGAGCCTAAGTGGGGGCCTGGCGGTGGTGGCAGATGCTGTGGGGGCCTGTGGAACAGTCCCGAAGTGTTGACCTTCGATGGAGGGCTGCTGTGCTGTGTGAAGCTGGGCTGGTCAGGCTGAAGGAGGTCTCTGGGGTGGGATCGGAGAATGGGGTGTAGCGGCAGGGGCTTCTCTACCCTCAGGTGGCCCTGGGGTCTGCAGCTGTCAAGCAGACTCTCCATACGGAGCTATTTTTAGGGAGCTGTGGCTGATCTGGTGCCAGATGAGGGCCCAGTGGGTGGGAATGTTTCCACCCTGGGATCCTCAAGCCTCCTGGTGGGTGGGGGGCGGGTTGGGTGCTCTGACCCCCTGTTCTTGTCCTCAG
Seq C2 exon
GGAGTGGGGAAGGCCAGGGCCAGATTCTGCAGCGCTTCCCAGAGAAGGACTGGGAGGACAACCCATTCCCCCAGGGCATCGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100241-SBF1:NM_002972:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.662
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(36.5=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)