RnoINT0130872 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130282026-130288509:-
Coord C1 exon
chr7:130288327-130288509
Coord A exon
chr7:130282112-130288326
Coord C2 exon
chr7:130282026-130282111
Length
6215 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCACCTACTCTTGTTCTCAGGGA
3' ss Score
8.34
Exon sequences
Seq C1 exon
CCCTGGTCAGCGGCGCCGCAGAGGAGCGGGCCGGGGGTGTCCCAAGTGTGCAGCTTAGGGCCAGCGTCGGGCCATGAGCGCGCCGCCATCGAATCCTCGAGCCGTGGAGCCCGCCTGCGCCCCTTGCCATGGCGCGGCTCGCGGACTACTTCGTGCTGGTGGCGTTCGGGCCGCACCCGCGCG
Seq A exon
GTGAGTGCCGAGTCTGAGCGCCGAGGGACGAGCTTGGGGCTAAGGGACTGGGACTGAGGACTCGAAACTAAGGAGACCCGGCCGGAGGCAGGGTCAGGACTTGGGGCCGAATTCTCGGGGCCTGCGAAAGAGCCCTCCGTAGTTATTGGCCACGGTGGCGTCCGGGCAACCCGCGAGGACCCCAGAATACTTGGCCTGTGTAAGATCCGTCCTCCTACACCTGGGCACCTGCCGTGTTCCGAGGTGGACCGGGGCGGGTAGCCCAGGCGTGGGAAGTTGGAGGTCCCTGCTACAGTTCAGTCTCCCCGATTCCAAGTTGGGTAGGATGGGCTCACCCCGTCTTGGCCGACTGCCGGTGGCTGTGTCTGGGAATTTCAGAGAGGGGGGCGGAACGTTGGTTTCCCAGCTTCTCCTACCCAAAGCTAGGTCTGAAGCCTCAAGCACGCTTGATGGGGTGCAGTGGAGGGGGAGGAGTTCATTGGTGGTATTGAGCCGGACTTCAGAAGAGAGTATCAGACTTTGGAAAAGAGCATTCCTGGTGCTCGCCCTGCCATCCAATCCTGTAAGCCAGGCCCTCAGTGGGGGATCAGTGTGGTGATTGCTACTCGTGTCTAGGAGGCCCTGATCTGGAGTTAGCGCCTGTGTCTGAGAGCCCTTCAGTCCAGGGGGTAGGAGAAAACGGAGCCTGACAGTGACATCAGTAACAGCCATGGAGACAACAGTGTTGGGGTGTTGGCTAGAGTCCTCAGTGTGCCAGGCCCTGCACAACCCTTTGTGTGTATGATCTCATTTCTCCCAGTAGCCCACTGAGATTGCCTTTGCTGTTGCCCTATCTTCAGCATAGAATCTGGCACAGAGAAATTGAGTTGTGGGTTTGGAATGGAGGCTGGGATTTGTACTCTGGTTATCAGAGTCCACCTACAGAGGGGCAGTATCTTAGGGATAGCTGTGGCCAGATGAGGCAGCCCCTACTTCCTAACTGTAGCATCTCCTACCTTGTTCCAGTTATCTCTTCCACACAGTTTACTGCTGCTTCTCAGACCAGCTGTCACCATCACCCTTCACGACCCAAACTTTCTTCTTTGCTTTTCTTCTTGCTAAGTCTCCACTAGGACCCTATATATACACTGGAAAACATAATCATCATCATCACAACCACCATAATCACCATCATCATCACCTCTGTCTCCCAAATTCCATTCTGTACCCTCTCACCAAGCACCCACTTCTCTCTGCTCTCATGTATTCAAGTCTATCTTTTGTCACTCAGTCACGAGCATCTGTCTCTCCCTCCAGAGAGGGAGTTCTCAAAGGCAGAGACCACATTGTTTTCATCCCCCTGTCCTTTTGAGCAGGAGGCTCGCCACCAGTGTTGTACTGGCGCACAGAGGGAGAACCTGTGCTCCAAGGCACACGTGAAGGCCAGTGAGGCTCCTCCTCTTCCTGGAACAGGAGTGCTGCTGGGTGCTGGGCCAGGGCTGAAGGAACAGAGTGGGCTTGGATGGTGGGGACAGTGGCATGAAGAAGATCCTGTGAGGCAGACTGTATAGAGGCCAGATCAGGGAGGTCTACTGGGAGTGGAGTAAAAGTTGAGGGTGACATGAGGTGTTAGGAGCTCCGTGAGAAGTTGCTGTGACACGTGGACTTTCTGATAGAGCCAGCCATTCAAGAAGCATGGACCTCTGACCTCTGTACAGAACAGAATAGAAGGTTGAGGCCAGAGGTGGCTACTTTTCCTGAATGATATGATGGAGTAATTCTCAAATTACCCATCACTGTGGAAATAGAAGGCCAATGAGCTCTCTGAGCATTGACTTCTGGGGTCAGAGTTGACTAGTTGCTGGCTAGCCACTCAGCCTCAAGGCATTTCTTTGAGGAACCAGCCGGGAATTGGGTTTCTGGGTGTGGACCGAAGGCAAGATTATAAGCCAAAAGATATTAGTACCAAGAGCAAAAGACCCCAAACTGAAGAATGCACTGAAAATTAGTTGTCCTTCCTTTGTCACTCTTCACCCTTGGCTTGTGCCAGTCACTGTGCACTCCTGCCTCAGTTTCCTCATCTTCATATGGAATGAGTCTCACAGAGCTGCTCTGAGGCTGTCAGAAACACTTGTGTGTAAAAAGGAGATAGTTTATATCTAAAGTCCAAGTATGAATACTGCTAGGTAGGTGTCTCTAAAGCAGGTGAAGGCCCGCTGTGCGCTGTGCTGACTGCCCTGGGGTGCACGGCCTTTCAGATTAAGGGGTGTGAGTGAGAGGATGACTTAACTTTGTCCGGATCAGAACTTTTTCTTGGGAGCTGCTAGGAATAGAACCTTGGTGCCGAGTGCCTTTTTAAGCTGTTGCAGTTGGGCCCAGAGTGCTACCAGAGGTAGCATCCTGGTTGCTAATAGTTACAGTTGGTGACCTGTGGGCAAGGCTGAAGACAGTAAATGCCTGGACTGTGTGTAACCCTTTCTCTTTAGACTCTAAAGTTTAAAGGGTGCTAGATGGGACAGCATAGACCCCGCACCTGGTTAGTCAGTGTGTGTGCTTTGTCTTGTCACCGAACTGGACACCTTTTTTAGCTTGAGGGACCAGACAGCATAGCTTGAGACCCCTGCCCAGTTCCCAGATATGGTCACTTAATTGCTTATAGCTTGGCCAGTTGTCAGTTTTCTGGGAACAGCAGTTATCAGACACTTTACCTGACTTAAACCTGACAGTTTCCCTTTTACCACTGCTGGGGAGGAAGAACTACATCTCTATGACCTGGCCTCCTTCAGCCTTGATGGTAATGAGGTGGCCACATTCTTGGGCCCATCTACTGTTCCCACCCATGGCCCTGCCCTCCCTCTAGATCAGGTTGGGGCTGTTTGTGATGGCTGCAGTTCCCTCCCAGCTCCCCCCACACCCTGAGAGCTTAAGGGTCCAAGATCTTGAATTAAAGTTTCTGTGGTCCGCTTATAGATTTGGGGTAGGTCAAAGATAACATCTGAAAGAGCTGTAGGCTTCCACTGCTCTTGTCGGCAGCTGTAGCTTGCCTGGGGCATTGTGTCTTCGTGTTCAGGTCTGATAGGTAGAAAAGCAGGAAGGCCGTATTCTTTTGTTTCCTCTCCCTTTCTCTATAGCTAGGCTCCTAAGAGGCAGCAGCTACCTGGTGCTGTCCAGCATGTGTGGTGAGGTATGTGGTGGGTTAGTCAGGGGAACTGTATTCGTTCTAGGCCTTCCCACAGTGTACACTGTCCATGGCTGGCCCTCCAGGCATCAGAGCCTGGCACTGGTGATGATGTGCTGCCAGCAGATGACAGAATACATGCTCTGTATTCTGCCACCCCGTCTGCCATTTGGGTCGCAGTCTGCATGGGCCTGGCTGCTGGAGGAAGCTCTCACTGAGGTGCTTTGAGTATAGGAATCCCAGGGTATCTTCCTAGGGTGGGCCTGTCAGGGACTTCCCATCTCTACTTTAGTGGACCTTGGTGTCCTCCATAGGCTGCCCGAAGAGCACTGCCTTGTAATATATGGCTATGCTATTGGGATTCGTTCGTTCTAACAGGCTTGGGTTAGGGAGGGAGGCTGTGCCTGCTCTTGTCTACCCAAAGTGGGCAGTACTTTGTTGGGCTAAGTACAGTCATTGCCAAAAGGCTTCAGTGGTGACAGACACAGAGGAACATGGCAAAACTCCTCACAAATGCAAGCCTGCAGTCTGGGGTCTCAGAGAAGCCAGAGAGAGTTAACAAGGCTTCCTCATGGTCTTACTGAGAGGGCCTGCTGTGCCTTAGGGCTCCGGAAGTTGTTCTGCCCTTCTGACTGAAGAACCTGTTTGTTTGTGAGGTGTGAGTTGGGCAGGGTGTGGGGAAGATGGTCATATAGCTGACTACATGCATTCAACAAGCCCTAATTAGGCTGTAACCTGTGCCATGCACGGGAACTTGTATATGCTCAGGCTCCTACAGGTGTACCAGTTGCCTAGTGAGAGGCTTATACTTGTTGGGGGGAGGACCTCAGGGTCTTGCTACAGGCCCCAGATTTAGATAGAAAGTAGATAGCAAACTTCTTAGAGGAGGCACTAGACGGAAATCTGAAAGTCAAATCCTGGGCTGTTATAGTACAGAGAAGGGCCTTAGGAGAGATGCCCACTGGGTGTCTACCTGCCTACCTTTATGGGACAGTTAGTTGGGAGTCTCAGGAAAGGAGCTCTTTAGAGTGTAGAATCCTCAGAAGGTTTTAAAGCTACTGGGAAGTGGGAATTAACATTGCACAGGATGAGGGATACTGGCAGTGGAAGGTGTCCATCCTCTCTGTGCCAACTCCCCTGGGTAGAGAGGCTACTAAAAACGACCCTCAGAAGGCTACTAGCCCTCCTGGCTTTGTGGGAAGGCTGCAGAGCAGAGGCTGCAGTCCCTGTCTATATACTCCCCCCGCTTTCCTCTGCATGCTGCCTCGTGGCAAGAACTGGGTGAGCCCTGGGTGCCAGCCAGGGCTAGGCCCAGATGGTGGTTTAGGGCCGAGCACAAGGAGGCTCTTGCCTGAGTGGGTGGGGGGAGGAGCCACGACTGGGGTTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCACAGTACATGCACTTCCCAGTCCTGTTGAGAGTGGGACCCGAGGAACCCCTGGGGGTTTTATCTTGGTAGGACAGGTGTGTGGGTGTGTGTAGGTAGGCATGACACCAGCAGACACCTGTCCCTTCCTTGTCTGTTGCCTGTCGCCTGCAGGGTTTTGGTGGTGGGAGGAGGGGAGCAGGAAGCTGAGGTTTTGTGAGTCATAATAGGCCGCTGCACCCCTCTACCTCCTGCTTAGAAGCAACCTTCCTAGTGCTGATGGTCTTGGTGCTTTATCCATGGTTCTGGAGGGATGCATGCTCTATCACGGTTGCAGCTGAGTTTCTTTGTTTTTAGGGACCTGGGAATTGTGGATTGTTGTGTTGGGCTTACTTAGTGGACCAGGCTGGGAGGAGGTGAGGCCATAGCCTAGCAAGCAGGCCCACTGCACACAGAAGTTTTCTGGAACTAAGCAGGAGGATCCATGAAAAGACTTTATGTAGAGCTCCCTCTACTCACTGTCTGCTTCTGCTGCTTCCACTGGTGGGAGACTCTGCATTGAGGCTGGTCTATGGAAAGCACTGTGCCCTGAGGATCTTGAAGCTGTATGTGTGAGAGGCCTAAGTGAAGAGGCCTGTCTTTCTTTCCGTAACACAGTGGTTCTCAACCTGTGGGTTGGAACCCCTTTGGGGGCCATATATCAGACATCCTGCATATTAGGTATTTACTTTGCAATTCATAACAGTAGCAAAATTACAGTTACAAAGTAGCAACAAAATAACCTTATGGTTGGGGTCTCCACAAAATGAGGAACTGTATTAAAGGGTCTCAGCATTGGGAAGGTTGAGAACACGGCCTGCCTGCCATACCATGCTCCACCGTCATGTGTGTGTATATGAGGCAAAAGAAGTCATCACACATTCTCATTGCTGCTGCCCTCCTTTGCTGCCTGATTTGGTGGTGCGAGGTGAGCCCTAGGCAAGGACTTTCACTCCACCTACATAGACTGCACTTAGAAGTATTTCCTTTGCTCGTACATACTGAGGGAGCCTGGGAGCTTCAGGGTGCAAAGGGGCAGCATATACTTGCTAAACTCTTTGTTTTTGGAGACTTGTGTTCTGGGAGGAACTATCTCTGAGGTACTGTGCATAGGTAGCAATTTGGGTCCATGTTGGTGTTTCCACCCCCATCATAAGAGGAGCTAAGGCTTGAATTGTACACATGGGCCCAGTGCAGACAGGTGACAGGGATCACCAAGATACCCGAGTGCATCCTGTGTATCCAGACGTGCCCACTGTCTGCATGGTGCTCGTCGTCTGGTACGGCTTGAGGCTAAAGCTGCAGGTTGGCAGCCAGGGAAGATGTTGAGTAAACTGAAACTCCTCCTCTCTGAAAAGTTAGGTTGGACTGGTAGGTGAGAGGAGGGATCTGGGGTCTCCTCTCTCTTCCTTATGGTGGCCTTGGGGTCTGTACCTATCCAATGTCTTATCTACCCAGAAGTGTATTGAGACAAATGACAGAGCTGTGAGCTTAGGTTGGTCTGGTGCCAGATGAGAAGGGACTGTTTCCATCCTGGCCAATCCCAACAATGTGAGGGTTGGGGTGTGTGGGGGAGAGTGCTCTGATGACCACCTACTCTTGTTCTCAG
Seq C2 exon
GGAGTGGGGAAGGCCAGGGCCAGATCCTGCAGCGCTTCCCGGAGAAGGACTGGGAGGACAACCCTTTCCCCCAGGGCATTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.483
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(36.5=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]