GgaINT0120687 @ galGal3
Intron Retention
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13683360-13684834:+
Coord C1 exon
chr1:13683360-13683454
Coord A exon
chr1:13683455-13684714
Coord C2 exon
chr1:13684715-13684834
Length
1260 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATTTGTCTTTCCTTCATAGGTT
3' ss Score
10.62
Exon sequences
Seq C1 exon
TGATGAGAGAGGAAGTGAAGCAGAGTTCAGAGTGTTTCACATCATGAGTCGAATTCTGGAAGCTGCAAATGGCATGTGTATGCCTTTACCTCCTG
Seq A exon
GTAAGTGCTATATTTTGCTGTTGTAATGCATATCAGTTCCTCCCAGGACAGTACAGGTTGTAGCATGTGTGTCAGGTTAGCTCTAGCAGTATTTAAATTTCTTCAAGACATGTGGAGGGAAAGGTCCTCCGTAAATGTGTGCAAGTAAAGTGAAACATTACTGAATACTTTATACAAATAGAGAAAACAAATCAGAGGTTTAGTTCACTGTTTTCAGTTTCCAGTGGAGCATGTGGGCACAGCCATAGCTCAGAACTAAGATCTGGATGACTTTCCCTTAGATTTTATAAGACAGCTGGCCTCAAATGTCAAGGGCTACAAGGGAAAATCCTATCCTGGAGCAAAACCAGGGTGTTTTTTCTTATGCTGTTGTTCTGCTAATGTTTTTCAGTTTTATCCTTAACAAATTGCTCCTGTTCTTTCTGAAGGAGATGATCTGTAATTGCTTACAGTCTTTTCAAAGCACTTGATTATTTTTGTTAGGGAAAGGCTTTTTAACATTGAGTGCTTAGGTTTTCTGTGGTTGAATTTGCCAATACAGACAGGGAATGTACAGCCAAGCTTTAGATTTGGACTGGATTCTAATCTTTTTAAGAATGCTCTTACAGAAACATTGAGCTTGCTGTCCTGCTGTTAAGCTGTAGGACCAAGGCCTGGCCTGCCAGTAACTACAGAATGACAGAAACAGAATCGTGCTCTGAATCTTATTAGAAAAAAATAGCTTCCAGTCTGTTTCTGCTTTCTTATTCTCTTTGAATCTCTTTCTAGTTAGTATTTTCTGATTTGGTTTCAATCTGGTTTTGGTATGAGGCTGTGCCTCGAACTTACAATGTGTGAGGGGCAAATGCTGCTGTGTGAGGGTGTCTTGTGGTTCAAGACCGTCATCTGGATAATGCTCAGTGAGAAACTGAAGTCTTCACATGGCCTGTGGTAATGTGTAGGTAGCAGCCATATACTGAATGTGGTGAGGCCTCAGCTTTGATAAATTGGGAAGAAAGAGGGAGATAAATTAATGGCACAACTCTGATGTAAGCCAACAATAAGCTTGGAGAAGTTTAATGATTGTTTTCAAGTCCTTAGTTTTCCTCTTTTTGACAGGGTTGTGCTTGACAAGACTTAAAGATAAACTCATTTCCTTACTATGCTTAGAAGTTGAGGAGAGTGTTGGCTTTAGATACAGTAATGCAGGTCAGTGCTACAAACTTGGAAAGAAATGTTTTTTTTTTTTTTTCCCCAAACAAATTTGTCTTTCCTTCATAG
Seq C2 exon
GTTTTCACTCTCTACACTTGGGGCTTGGTGTTCGATGTCTCCCCCTTCATACTCTCCTGCACTATATTGACAATGGGGTTCTACATCTGACAGAAACCTGTGTCAGGAAACTGCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(27.8=100)
A:
NA
C2:
PF149591=GSAP-16=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGAGAGGAAGTGAAGCAGA
R:
TTTCAGCAGTTTCCTGACACAG
Band lengths:
214-1474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]