MmuINT0120082 @ mm9
Intron Retention
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20787326-20793614:+
Coord C1 exon
chr5:20787326-20787420
Coord A exon
chr5:20787421-20793494
Coord C2 exon
chr5:20793495-20793614
Length
6074 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTCTGTTCCACTCACCTAGGTT
3' ss Score
8.45
Exon sequences
Seq C1 exon
CAATAGCCATTGCAGTGCTGCAGATTTTGAAGTCTTTCATCTCATGACCAGGATTTTGGATGCTGCTAGCAGTTTGTGTTTGCCTCTGCCTCCTG
Seq A exon
GTGAGTCTAGGGTCTCTTGTCATTTGCTGTAATAAGTTTGTTTTTCACATGGCCTCTGCACAGACAGTAGCTCTGAACTTCAGGATGGCACCCGTGTGTCAGCAGCGGGTTGGTCTTGAGGTTGGCCACTATTGGCCAGGCCTCCCCTGACTACTAAACTCCTGTTGCCAGCTCCAGGAAGAGGTTCCAGCCAGTTCACAGCACCCTTACCACGTGTGCTCAGCTACTCATATAAGCGGTCACTTGTTAGATCAGTCCATGAGTGTGTGGAGTAACCATTTCATGCCAGGTAACGTACAAGAAATGAAAACAGTTACAAACACCAGTGGGAGTGGCATACGATGATAGACTTGGCACTATGGTTTTGTTTTGTTTGTTTGTTTTTTTATTGTAATAGGAAGAATCTATAACATGAGATCAACCCTTTTAACACTTTAATGTCAATACAGTATTACCTATAGGCAAGCTCTCATCTTCCGAATGGCCTCTCCTTATAGCCCATGTTCAGCAGCTGCCCCTTCCCATCTTCTTGGTCCTTGGCCCCCACATTTCTATTGTTTCTATGAGTCTGACCATTTTAGACCACTTGCCTCTTCCATGACTACTGGTTTATTTTTACAAGACCAGTGCTCTAATCCCTGAGCTATAAGGGTCACTTATTTTAACCATCATAATACCTCTAGGTCCACTCATTTGTCCTGCATGACAAGATACCGTTTTAAAGCAGAGTAACATTACACTGTTTGTGTATTTTCATTTTATTTACCTGTTTATCAATGGGTGTTTCTATATCTTAGCTATGATGAATTATAGTCTAATGAGCATTAGTGTACAAGTCCCTTTACTATCTTGACTCTCATTCTTTTGGATGTGTAGAATGATTATGGGGTTGTCTTGCTGATCCTATGTTTGGCTTCTGTGAGGTGGCCTGTGCTGTCCCCCACAGTGGTGGGACCATTTCACTGACAGGCAACTGACCATCCACAGTGCACAAGGGCTTCCGTTTCTCCACATTCTCTCCAACACTTACCTCTGCTTTTGTACCCTGAGAGGTGGAAGGTAACATTTCACCATAGTTTTGATTTGCATTTTGCTGATTAGTGATGTTGACTCTGTCTTTCCGTGTAACTCTAAATTAGTCATATTTTCAGGGACTAGAGCTCTGTGTCCGCAGGTTTAATAAGATGTTGTCTTGCTGTTGACTTGTTTTATTATTTTTATGGCCTGGATTTGCAACCTCTCATCAGTTTTCTGCTTTATATGCATTCGCTCCTTTATTCTGTAACTACTTTTAAACTCGGCTACCTTTCTTGCTTTCCTTCACCCTCAGTCCCCTGCACCCCAGTCCCCTGCCCTGTGTAGGCTCAAGTAGCACAGGTAGCTCAGGTAGCTCAGGATGGCATCAAACTTTCGTAGCCAACACTGGCCTTGAACTTCTGATTATCCAAGTTCTGGCATTACACGAGGGTGTTTCCGTACCATACCAGGCTTTTCCTTTTCTATCAAATGCTTATAATTGTTCATGTGACAAGAGAAGAGAGGGCAAAGTGGCACCACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACAAGGGGTTCATACTAAGCATTTATAAGGGAGATTGCTTTTCAGATCTATGGGACTAGCAAAAATTGAGTTTCATAAGTCAGACATGTAAGTAAAAAAAGGGAGTGAGGAAGTGGCGAGCAGAGTCGTTTGTTTGTTTGTATGATTGTTTTTATGTTTGTTTGGTTTTGTTTGCTTGCTTGTTTGCTGTCATCTCTCTCTCCCTGGCTTCAGCAAGGGCGATATCTCTGAGGACGACGATTAGTGCGATGAAACCGATGGCTAGTTATAGCCACCCACTCTGCTCAGAGCTGACACACAGAGATGAGGCTGTAAATAGGCTACTGCCCTTGATACTGTGCCAATGACGCACACATGAAGGATTGTTGGGGTGTCACCAGGTACCCGACACTGGAGAAGGAATTTTGAACCTGGGAATACGACTCGTGATCTAGTATAAATGCTTTTTCAGGAATAAGTTTTGACTTTATTAGTCTGGGAAAGAATTTCCAAGTCCATGTGAAACTGTGTTGATTAGGTAGTAATACTATAATTTGTTTTGAATTGGGGAACCCAGTGAACTCAATCTGTTTTTAGCCATTTACATCAACTTGAGGACAACATCTGCACGTCATGTGATCCTTGGTGTTGCCAGGAATTATGAGTGACCCAGTGCTCATGACTCATATATTCAGAGAGAAAGTGCCGTGACTTCTCAGAACTCAAACTACAGTTCACTGAGCATAATTTGTTTGACCGTGTACATCCTGAGGACAGGCTGTGATTCTCTGTCATTCCTGCATCCAGTCAGTTGTTGAGCATGTACATGTTATCATGAGACTTTTCCTGTCCTGGCTGGTTTTATGTCAACTTGACATAAGCTGGAGTCATCTGAGAGGAGGGAACCTCAGCTAAAAAATTGCTTCCCTTAGACTAGGGCATGGGCAAGCATGTAGGGTATTTTTTTAAACAATTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCTGAAAGTCCCCTATACCCTCCCCTCACTCTGCTCCCCAACCCACCCACTCCCGCTTCCTGGCCCTGGTGTTCGCCTGTACTGGGGAATATAATCTTTGCAAGACCAAGGGCCTCTCCTCCCAATGATGGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTCATATTGCTGTTCCTTCTATAGGGTTACAGACCCCTTCAGGTCCTTGGGTACATTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGTTGTGTCAGCAAAATTTTGCTGACATATGCAATAGTGTCTGCGTTTGGTGGCTGATTATGGTTGGATCCCCATATGGGTGGGGCAGTCTCTGGATGGTCCTTCCTTCCATCTCAGCTCCAAACTTTGTCTCTACCATCCAATGGAAAAAGGACAGCATTTTCAACAAATGGTGCTGGCTTACCTGGCGGTTATCATGCAGAAGAATGAGAATTGATCCATTCTTATCTCCCTGTACAAATCTCAAGTCTAAGTGGATCAAGGAATTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGAGGAAATCCTTGAAGATATGAGCACAGGGGGAAAATTCCTGAACAGAATAGCAATGGCTTGTGCTATAAGATCAAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGAAAAGGATCTTTACCAATCCTAAATCAGATATGGGACTAATATCCAATATATACAAAGAACTCAAGAAGATAGACTCCAGAAAATCAAATAAACCCATGAAAAAACTGGGGCACAGAGCTAAACAAAGAATTCTCAACTAAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGACATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAACAGGAACACTCCTCCATTGTTGGTGGGATTGCTAGCTTGTACAACCACTCTAGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAATAAGGACCCATGCTCTACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAATAGAGGAATGGATACAGAAAATATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGAATGGATCTGGAGGACATCATCCTGAGTGAGGTAACCCAATCACAAAAAGAACTCACATGATATGCACTCACTGATAAGTGGGTATTAGCCTAGAAACTTAGAATACCCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAGGAAGAACAAGTGAGGATACTTCATTCCTCCTTAGAATGTGGCATTTTTTTAAAGTTAGTGATACATGTGTGTGTGGGTCCAGCCTATTTTGGGTGGTGCCATCCCTGGGCTGGTGGTCTTGGGTTCTATAAAAAAGCAAGTTGAGCAACAAATGAGGATCAAGCCAGTAAGCAGCACCCTCCATAGCCTCTGCATCAGCTCCTGACTCTAGGTTCCTGCCCTGTTTGGGTTCCTGTCCCTGTTCCTCTGATGTTAAACAGTGACATGGAACTGTTAGGAGAATAAACACTTTCCTCCCCACATTGCTTTAGCTGTGGGTTTTTGTCAGATAAATAAGAAACCCTAACTAGAACACGTCCTTCTCTCTTCTTCCCCACTTGGTGCCCCCAGTCCCTCTTATACCTGTCCAGACCACAGTTCTTATGGGTCTAATCCATTCTTTGTCTGTTGGCATTGTAATATTCCAAAAGTAAAATTTGTTCTTTTATGATGCTCAAAAACTTTCAGTGCTTCCTTGAGGTTTCCTGGATAAATTCTTTAGTAGCATTCAGCATTGGGTCCATGTTATATGTACATATAGCACAGAACTGGTCACATGTAAATATATGTTCATTTTTATGATGAATCAATTGGCACCTCTACTACATGGCAAGGTGAACAGGAGTGGTAATGGTCAGTATTTTGTCCATTGTCCTACTGCCCACCCCGGCTTCATGTATGAGAATGTGTTAAGTAAATGTTGCCCAGACTTACCTGTTAGTCATCAGATTTCAACTCAAATGATCACTTCATGTTTCTGAATATACCCATGCATGCTCTCTCACCTTAGGTCTCTGTTCATATTAACCCAGTTATTGTTACAGTAACCCAGCTACTAGATATTGCTCTAAGATATTGAACTAAGGCTACAATCCCCAGGCTATGGTCAGGCTACTCTAACCTTTTGCTTACTATTTATAGGATACAGGGAAGTTTTCTCAGCTCCTGGGAATCTCAGTTTCCCTGCCTGAATCTATGGGAATCTAGTAGTTGCATCTGATAGTCTTGGGTATGGAGCAGGTGAACCAGTGCTCACGTAGTGCGTGCCCAGTGTTAGTCACACTGTACCATATGCTGGGCTCTGTATAACTGCTCTATTCCTTGTAATAGCCTAGAAGGAAGGTATCCGCATTCCACTTTAGGCGGTAAGGAAGGAAGTTCAGAAAGGCAGTTATTTAGAGCTGCTTAGTTAAACAGCAGCAGGATCCTGGCCTGGATCTACTCTTCTGCCTCTGATGTTTCTGCACACTAAGTATAGACCTTTCCAAAGATGCTCAAGAGGCTGACACTCCAAGAATGGGTTTTCTTATTCTCATCTGGTCTGGTATCTCCTTCCATATGTCTTTCTTTTGTTCCTTGTCACTGATAGTATGCATAGAGCTCTGGGTTTGTAGCCCTACTCATTAGACTTGAGAGAGAGGGAGGGAGAGAGAGAATCATCTCTACTGAATTTTTACAGGGCTCTGATCGGGTCATATCATCTACATTTCTTTTCTATAGTTTAGTCCAAGTAGACTGCAAAAGTCTTTGTGAGAGGACCAGAGACAGAGATATAACTTGTCATCTGGCCCCAGCTTCCTTTTATCTTTCAGCAAAATGGTCTCCATCCCAACAGCCTTTTAGCTTGGGCGTGTGGAATTTGAAGATCAGTTATCAAGGACAGAGAGATTATATTAACCAGGAACTTCTTGTCATAAAAGGATTGGCTGACCCAAGCCCTAAGCAAGCTCAGCGCTTGCTTTACTGACAGGATCAATCCATCCTCTCTGGAAGCTGGAGATGCTGGCTCGGCTCGTCATGTCTGCTTCTGTTCCACTCACCTAG
Seq C2 exon
GTTTCCACTCTCTGCACACGATCCTTGGGGTCCACTGCCTCCCTTTGTACAGCCTTCTGCACTACATTGATAACGGAGTGCTGCTGCTTACTGAGACCGCGGTCACGAGGCTTATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-Pion:NM_175437:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(27.8=100)
A:
NA
C2:
PF149591=GSAP-16=FE(34.8=100),PF056127=DUF781=PU(23.6=51.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: