GgaINT0120883 @ galGal3
Intron Retention
Gene
ENSGALG00000008461 | F1P302_CHICK
Description
NA
Coordinates
chr1:11461015-11465690:+
Coord C1 exon
chr1:11461015-11461132
Coord A exon
chr1:11461133-11465547
Coord C2 exon
chr1:11465548-11465690
Length
4415 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATTGTCATTTTAAAACTAGCTT
3' ss Score
2.95
Exon sequences
Seq C1 exon
TAGACTATGTCAGAAACTGTATAATTGGAAAAGGAGCTGAGTACAAAGGAACAATATCTATTACCAAGAGTGGTATTCAGTGTCAGGCCTGGAATTCCATGATCCCCCATGAGCACAG
Seq A exon
GTAAGAGTTCAGGAGCAGAGACAGTGGGAATAGTGCTCAGACAGATTCCACAAAGCACAGCTTGACTTATTAGCAGACAAAGAATTTATGAGAACACTGACCTTAAACAACAAAATCTCTTAGGAGTATTCTTGCCTTTCCCCGAGAGATGCCATTCTCCAGGTTCCAGAAAAAAAAACCTTCTCAAACTTTCTCCAAAGAGTTCTCTCCAATACCAGCCTGTGTGCCTGGATCCCTTCCTCTCCTGCACTGGATTTTTCAGCTGTTTATTTCCTTTTGATCTCTTAGCTCCTGGCAGTAGCAAAACAGCTGCTTTACTTCAGCCCAGAGTCTGGAAGTTTATCACTGTTTTCTAATGGGCTCCTAGGAAATGGGTCATTTAAAAAAATACATCATAGGAAATGAAGGATGGTAAGAATATCAGCCCACCTATTTGATCAGTGTATAATTATTGTTACCACATTTTGCATAGTTACTATTTATTCTGTTCTATTTGTAGAATATATTAAACTCCATAAAGCACTTAGACCAGGCAATAAATACATGAAAGGACTGAGCAGATGATTTAAATCCTTTCCTTCAGATTGTACAAGCAATAAATAAAGACTGATGTGGTTAAACTTTTGAGTTTAAGATCTGGTATAGTGAGGAACTGAGGACATATCTACACCCTGAGAATAGCCCCATTCCAACTACATTAGGTAAATAAAAGAGAAGAAAACAAAAAAACTGATGCCAGGAAGAGTAATGATAAAAGCAGATGAAACCACAGCAAAAAATTCTGGAAACTAGCAGAAAAATCTGAGGCACTTGTATACTCTTTGACCATTTCTGTTTGACTCTTTTCATTTGGGTTACAACCACTTAGATGATAAACTCTTCAGGGGCAAAAAAAGATGTTTTCTCTCGCCCAATAGTTTCTCATTCACATTGCTGACTTTTGATCTCTTCTTCCAACATCAGCACTTTGCTTAGCAAGAGCCAAGCTGGAGACTGCTAATGAGGAACTGGGCTGTGTACTGCTCAGTCCTGTCCTGACCAAATCTATCTAGAGTGCAAGATGAGAACTTGGAACAACTTTAAAAGGCGAAGGATACTTGGGATCTCTCCTCTTATAATGTGTCACAGAGCTGAGCCTCAGGCTTGAACTTGACTGGACTTGATTGCTTACAGTATAGATGGTAATGTGTCTGATTTTCAGTGTTGGACCAGACCATGCTTAATTGTGAACATATGATAAATGCCATCAGCTCACACGGCAATGACCTCTTGAGACTCAGCACTTTGAGGTACACAGTATTCATCTTTTAGAAGTGAAACAATTCTCAGTAATCATGGAATAAGCAGGGATAAGCATTAATTTTGTATAATATACTTGTGACAATGTAATAAAGAAATATGTCACTAAATTACATTTTAATACATAGCAACCATGGCTCTATATAGCACAATTGTACAGCCACTGTTCTGTGATGAATTTTATGAGAATGACTTTTCTCCTCTCTTGTGCAATAAGTTTAATTTTTAAAAGGTCACTGGATAAATGAGGTGGCTGCTTGCTAATTTTGTTTTTCAACATCAGAAAATATGATTTCATCATCAGAGACATGAGGGAGATGGGAAGAAGCAGACAGTACTGGTGTGTTTGGAACTTATTATTATGAAAGGCTTAGATTTTTAGGTCAGTTTTTCTCAACATCTGATTATCACAAACTGCCAGTTAGAAAATAAAGCTTTTTTTTTTTTTTTTTTTTTCATATTCAAGGGAGAAATATAATTTACTGATTTTTTTCTTGATCTTTCCAGCAAAATTTGAAATAGCTTCAAACTTTAAACTTGTGTTTAAATTTAACTAATGATACATTTAATTATTTTTTATTCCAATAACACCTGAAGACTCCTCATTGAAATCAGGATCAGGTTATTTTAGCTTCTATCCTAGCACAGATTACAAAACTGTCTCTCAAAATCTTTGTTTCTTAAGTATTTATTACCTAAATGGCTAAAGCCATTTTAAAATTGGCTAAAGCCAACATAAAAAGAGTCAAAGAGAAAAGGTCTGAGACTGGACCAGCGCTTCACAGACTTTTTGCTAGTTTCCAGCTACTTTAGCTGGGGTTGAATCTGCTTTTACTATTACTCTTGCTGGCCTCATCTTCTGGCTCTGTTTTCTTTTTCCTTGGCTAATACAGTTGAACTTAACCAGTACACAAATTTAGGAGGGTTCTATTGTATAATTCTGGGTGAGCCCTTAATATGTCTCATATCTTCCTTCCTCAAGAATATTGCTTCCATACCTGTTGAAGCCAGTTGTCTGTGTGACCCATCTCGACTTTTAATGCTATCCTTTAACATTTTTTTTCGTGTTTTAACAGTAGATCTGACATAATTTGAGATGCCAATATTTTCTAATATTCATAATTTAAGTTTTTGACAAGAAAAATTAAATATTATTTTTCTAACCTACATTGACATATCACATGAAAACCTACATAGGTTGTAACACACCATCAAAAACAGTTGTCCAGGATTGTCTTTACTTATTTTTTTTTTTTGAGAGTTGCAAGACTACCGAGAGAAAATAGAAGCAACAGTTTCATAAGTAGCAGTTAGGCCAGAGAAATCATTCTCTTGCAGCATCAAAAGTGATAAAAGCACATTTAAGAACTACTTCCACATTGCCTTGACTAGAACCACAGTGTGTTCGACTAGAACAGAGGTATTTTCCACCTCAGTTAATTCAAAGATTACATTAACTAGAATAAAACATGATTAAAATGTCACTTTGGAATTGTTGGAATTTTCTGTTTGTCTGCTTTTATATATTTATTTATTCATTCATAACATGGCATTTGCCAAGGACAACAGAGACCGTATATTTCTCATTTGTTTTTGTATATAAACTAAATCAGTGTTTGTGTATAAAGACTGTCCCCAGCGCTCCATTCAGATTCCTGTGCTCAAGTAGCTACGTTTGTTCAAAGGAAGTTAGATTAAATTTTAAAGCATTTTTTTTTTTTAAATATAGATACTCTTGAATTCCCTTGGTGATTAAGAATAATAAAAAAGAAGCCAAAAAAGAAAAGAAAAAAATATTCATTAAAAAGTGCTGGGCATTTTCAGAATAAAAAGTGTACTTTATTTGTAATGTTCCCACAATTTAAATGTATTGAAGAATAAATGGAACAAATTTAGAAATCCCAGAAATTAAACTATTAACTATTAAGCTAAATTACAAGGTTTTTGTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTTTTAATTGTCTGATCCAGAATGTATTTTTCACAACTTTTCAATTAAGCAAAAGAAAAGAAAAGAAAAAAAAAAGTTCCTGGAATTAAGTATAATTCTGAATTGAATATGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAACTATAGAATTTAGCTGGTGTTTAAGCAACACTGCAATGAATCTGTCAGTGAATGAGCACTGGGTTTGTCTGCGATGTGCAGACTGTGCAGTGATGAGCTCTTAGGTTGGGCTCCTTACCATGGTGTTAGCTTTTTGTGTCTCTAGAACACTTAATGTTACAGACAGTCAAGAGGACAAAACATTGACCCTGGAGAGTTCATGTTTGTTGAACTGGGCATCAACAGGGAAGTATCATACTGCAAATATCTGTCAGGCCAAAAATACAGTATTAGCACACATTTCTGTTCAATCCCTTAAAGAAACCAAAGTGCTTAAGATTGCCCTGAAAACCTCTAATGTAAAGGAATAATGCTATTGTTATTTAATAGGCCTTTACACCAAAAGAAGAAAATACAGTGAAAGAGTGAGAAAAATTTTTGTCAGTGAGGTAGCTCATAAATGAACCAATTTGTGCAATAACACTGACAAGTGGGTCCTTATGTAGCAGATCCTATCGTGACATCAGTGAGACTTGTGTCAAAACATGCAGCTAGGCATTTGAAAGAGGGATCTGGGGCATTTTCTGGTACTGGAACAAAAAGCAGGCGTGGTTTCAGTTAGTGAAAGCATCTTGGCATGGTGTGAAGCACTGCCCAGCCATGTTCACGTGGTACTCAATTCTAGCTGCTGCCTGATCAGGTATGAGACTTCTTTGTGGTCTTTACGGTGTAGCTGTGCTGGGCTGAGCTTTCTATATGTGCACACAGTGTACAGGAACAGCAGGTTTGTCAGAAAATTGTCCCAGACATAGGCCATTGGTTGAGTAATTCTGTCTGAAGATGTGTATTTGTGTATGGGCAGATATTTGGATGTGCGCATTTGTGTAGGCAGGGTGGAGGGAAAAGGAAGAAGAAATGTGATTGTTTCAAACTGTTTATAAAAATAGTATGATTAACAATGAAATTTGCATGCTCTGATGCTGTAATGATTGTCATTTTAAAACTAG
Seq C2 exon
CTTTTTGCCTTCGAGCTATCGGGGTAAAGACCTGCGGGAAAACTACTGCCGAAACCCCCGAGGGGAAGAGGGAGGGCCATGGTGTTTCACCACCAGCCCACAGATGCGCCATGAAGTCTGTGACATCCCCCTCTGCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461:ENSGALT00000039793:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(5.9=12.5),PF0005113=Kringle=PU(41.8=82.5)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]