GgaINT0120883 @ galGal4
Intron Retention
Gene
ENSGALG00000008461 | HGF/SF
Description
hepatocyte growth factor precursor [Source:RefSeq peptide;Acc:NP_001025541]
Coordinates
chr1:10488744-10493416:+
Coord C1 exon
chr1:10488744-10488858
Coord A exon
chr1:10488859-10493273
Coord C2 exon
chr1:10493274-10493416
Length
4415 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATTGTCATTTTAAAACTAGCTT
3' ss Score
2.95
Exon sequences
Seq C1 exon
ACTATGTCAGAAACTGTATAATTGGAAAAGGAGCTGAGTACAAAGGAACAATATCTATTACCAAGAGTGGTATTCAGTGTCAGGCCTGGAATTCCATGATCCCCCATGAGCACAG
Seq A exon
GTAAGAGTTCAGGAGCAGAGACAGTGGGAATAGTGCTCAGACAGATTCCACAAAGCACAGCTTGACTTATTAGCAGACAAAGAATTTATGAGAACACTGACCTTAAACAACAAAATCTCTTAGGAGTATTCTTGCCTTTCCCCGAGAGATGCCATTCTCCAGGTTCCAGAAAAAAAAACCTTCTCAAACTTTCTCCAAAGAGTTCTCTCCAATACCAGCCTGTGTGCCTGGATCCCTTCCTCTCCTGCACTGGATTTTTCAGCTGTTTATTTCCTTTTGATCTCTTAGCTCCTGGCAGTAGCAAAACAGCTGCTTTACTTCAGCCCAGAGTCTGGAAGTTTATCACTGTTTTCTAATGGGCTCCTAGGAAATGGGTCATTTAAAAAAATACATCATAGGAAATGAAGGATGGTAAGAATATCAGCCCACCTATTTGATCAGTGTATAATTATTGTTACCACATTTTGCATAGTTACTATTTATTCTGTTCTATTTGTAGAATATATTAAACTCCATAAAGCACTTAGACCAGGCAATAAATACATGAAAGGACTGAGCAGATGATTTAAATCCTTTCCTTCAGATTGTACAAGCAATAAATAAAGACTGATGTGGTTAAACTTTTGAGTTTAAGATCTGGTATAGTGAGGAACTGAGGACATATCTACACCCTGAGAATAGCCCCATTCCAACTACATTAGGTAAATAAAAGAGAAGAAAACAAAAAAACTGATGCCAGGAAGAGTAATGATAAAAGCAGATGAAACCACAGCAAAAAATTCTGGAAACTAGCAGAAAAATCTGAGGCACTTGTATACTCTTTGACCATTTCTGTTTGACTCTTTTCATTTGGGTTACAACCACTTAGATGATAAACTCTTCAGGGGCAAAAAAAGATGTTTTCTCTCGCCCAATAGTTTCTCATTCACATTGCTGACTTTTGATCTCTTCTTCCAACATCAGCACTTTGCTTAGCAAGAGCCAAGCTGGAGACTGCTAATGAGGAACTGGGCTGTGTACTGCTCAGTCCTGTCCTGACCAAATCTATCTAGAGTGCAAGATGAGAACTTGGAACAACTTTAAAAGGCGAAGGATACTTGGGATCTCTCCTCTTATAATGTGTCACAGAGCTGAGCCTCAGGCTTGAACTTGACTGGACTTGATTGCTTACAGTATAGATGGTAATGTGTCTGATTTTCAGTGTTGGACCAGACCATGCTTAATTGTGAACATATGATAAATGCCATCAGCTCACACGGCAATGACCTCTTGAGACTCAGCACTTTGAGGTACACAGTATTCATCTTTTAGAAGTGAAACAATTCTCAGTAATCATGGAATAAGCAGGGATAAGCATTAATTTTGTATAATATACTTGTGACAATGTAATAAAGAAATATGTCACTAAATTACATTTTAATACATAGCAACCATGGCTCTATATAGCACAATTGTACAGCCACTGTTCTGTGATGAATTTTATGAGAATGACTTTTCTCCTCTCTTGTGCAATAAGTTTAATTTTTAAAAGGTCACTGGATAAATGAGGTGGCTGCTTGCTAATTTTGTTTTTCAACATCAGAAAATATGATTTCATCATCAGAGACATGAGGGAGATGGGAAGAAGCAGACAGTACTGGTGTGTTTGGAACTTATTATTATGAAAGGCTTAGATTTTTAGGTCAGTTTTTCTCAACATCTGATTATCACAAACTGCCAGTTAGAAAATAAAGCTTTTTTTTTTTTTTTTTTTTTCATATTCAAGGGAGAAATATAATTTACTGATTTTTTTCTTGATCTTTCCAGCAAAATTTGAAATAGCTTCAAACTTTAAACTTGTGTTTAAATTTAACTAATGATACATTTAATTATTTTTTATTCCAATAACACCTGAAGACTCCTCATTGAAATCAGGATCAGGTTATTTTAGCTTCTATCCTAGCACAGATTACAAAACTGTCTCTCAAAATCTTTGTTTCTTAAGTATTTATTACCTAAATGGCTAAAGCCATTTTAAAATTGGCTAAAGCCAACATAAAAAGAGTCAAAGAGAAAAGGTCTGAGACTGGACCAGCGCTTCACAGACTTTTTGCTAGTTTCCAGCTACTTTAGCTGGGGTTGAATCTGCTTTTACTATTACTCTTGCTGGCCTCATCTTCTGGCTCTGTTTTCTTTTTCCTTGGCTAATACAGTTGAACTTAACCAGTACACAAATTTAGGAGGGTTCTATTGTATAATTCTGGGTGAGCCCTTAATATGTCTCATATCTTCCTTCCTCAAGAATATTGCTTCCATACCTGTTGAAGCCAGTTGTCTGTGTGACCCATCTCGACTTTTAATGCTATCCTTTAACATTTTTTTTCGTGTTTTAACAGTAGATCTGACATAATTTGAGATGCCAATATTTTCTAATATTCATAATTTAAGTTTTTGACAAGAAAAATTAAATATTATTTTTCTAACCTACATTGACATATCACATGAAAACCTACATAGGTTGTAACACACCATCAAAAACAGTTGTCCAGGATTGTCTTTACTTATTTTTTTTTTTTGAGAGTTGCAAGACTACCGAGAGAAAATAGAAGCAACAGTTTCATAAGTAGCAGTTAGGCCAGAGAAATCATTCTCTTGCAGCATCAAAAGTGATAAAAGCACATTTAAGAACTACTTCCACATTGCCTTGACTAGAACCACAGTGTGTTCGACTAGAACAGAGGTATTTTCCACCTCAGTTAATTCAAAGATTACATTAACTAGAATAAAACATGATTAAAATGTCACTTTGGAATTGTTGGAATTTTCTGTTTGTCTGCTTTTATATATTTATTTATTCATTCATAACATGGCATTTGCCAAGGACAACAGAGACCGTATATTTCTCATTTGTTTTTGTATATAAACTAAATCAGTGTTTGTGTATAAAGACTGTCCCCAGCGCTCCATTCAGATTCCTGTGCTCAAGTAGCTACGTTTGTTCAAAGGAAGTTAGATTAAATTTTAAAGCATTTTTTTTTTTTAAATATAGATACTCTTGAATTCCCTTGGTGATTAAGAATAATAAAAAAGAAGCCAAAAAAGAAAAGAAAAAAATATTCATTAAAAAGTGCTGGGCATTTTCAGAATAAAAAGTGTACTTTATTTGTAATGTTCCCACAATTTAAATGTATTGAAGAATAAATGGAACAAATTTAGAAATCCCAGAAATTAAACTATTAACTATTAAGCTAAATTACAAGGTTTTTGTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTTTTAATTGTCTGATCCAGAATGTATTTTTCACAACTTTTCAATTAAGCAAAAGAAAAGAAAAGAAAAAAAAAAGTTCCTGGAATTAAGTATAATTCTGAATTGAATATGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAACTATAGAATTTAGCTGGTGTTTAAGCAACACTGCAATGAATCTGTCAGTGAATGAGCACTGGGTTTGTCTGCGATGTGCAGACTGTGCAGTGATGAGCTCTTAGGTTGGGCTCCTTACCATGGTGTTAGCTTTTTGTGTCTCTAGAACACTTAATGTTACAGACAGTCAAGAGGACAAAACATTGACCCTGGAGAGTTCATGTTTGTTGAACTGGGCATCAACAGGGAAGTATCATACTGCAAATATCTGTCAGGCCAAAAATACAGTATTAGCACACATTTCTGTTCAATCCCTTAAAGAAACCAAAGTGCTTAAGATTGCCCTGAAAACCTCTAATGTAAAGGAATAATGCTATTGTTATTTAATAGGCCTTTACACCAAAAGAAGAAAATACAGTGAAAGAGTGAGAAAAATTTTTGTCAGTGAGGTAGCTCATAAATGAACCAATTTGTGCAATAACACTGACAAGTGGGTCCTTATGTAGCAGATCCTATCGTGACATCAGTGAGACTTGTGTCAAAACATGCAGCTAGGCATTTGAAAGAGGGATCTGGGGCATTTTCTGGTACTGGAACAAAAAGCAGGCGTGGTTTCAGTTAGTGAAAGCATCTTGGCATGGTGTGAAGCACTGCCCAGCCATGTTCACGTGGTACTCAATTCTAGCTGCTGCCTGATCAGGTATGAGACTTCTTTGTGGTCTTTACGGTGTAGCTGTGCTGGGCTGAGCTTTCTATATGTGCACACAGTGTACAGGAACAGCAGGTTTGTCAGAAAATTGTCCCAGACATAGGCCATTGGTTGAGTAATTCTGTCTGAAGATGTGTATTTGTGTATGGGCAGATATTTGGATGTGCGCATTTGTGTAGGCAGGGTGGAGGGAAAAGGAAGAAGAAATGTGATTGTTTCAAACTGTTTATAAAAATAGTATGATTAACAATGAAATTTGCATGCTCTGATGCTGTAATGATTGTCATTTTAAAACTAG
Seq C2 exon
CTTTTTGCCTTCGAGCTATCGGGGTAAAGACCTGCGGGAAAACTACTGCCGAAACCCCCGAGGGGAAGAGGGAGGGCCATGGTGTTTCACCACCAGCCCACAGATGCGCCATGAAGTCTGTGACATCCCCCTCTGCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461:ENSGALT00000039793:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(41.8=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]