GgaINT0121137 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79207442-79208045:+
Coord C1 exon
chr1:79207442-79207566
Coord A exon
chr1:79207567-79207940
Coord C2 exon
chr1:79207941-79208045
Length
374 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
CATTTCATCTTCTCCCTCAGGTA
3' ss Score
10.81
Exon sequences
Seq C1 exon
ACAGTGCTGAGATACAACATTCCCTTCCCTCAGGTTTCCAAGTCCTTTGCCTTACAAGTGAAAACCAAGCCAGACAATTGCACTGAGGACGATGCATACTCTGTTACTCTTTATGTCAATGTCAG
Seq A exon
GTGACTTTGAAGACACAGGCTCATAGCCACACTTGGGGCTAGATATGGCTGGAGAGCAGAGTGATACTTGGCTGCAATGAAGTAACCGAACAGTTGTAATAGAAGGGCCATATGGTAAATGGAAGGGGTGGGAAAGGAAGATAAGGTGTCTCTAAGGAGGAGGAAGTGGGGAAAAGTTCCAAAGTCTTTTGTTCTTGCTAGGGAGAGGAACAAAAATAGTCACCTCAGATTAGGGGTGCTCACAGCACTGTAGCCATTGTATACCATGAGCTACTGCCTGACCACAGTTCTGGCTGTGCTGTCTGGTTCAGGGTCCTGCATGCAGGGTAGTATGATGGAGGAAAGGGGGAACTTCATTTCATCTTCTCCCTCAG
Seq C2 exon
GTACACTGGGAAGAGAGCCATTTCCAACATGGTGATTGTGGAAGTGTCCCTACTGTCTGGATTTGTCCTGGCTGCAAGATCTGGGATGTCTGTAAGAGGCCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(43.8=92.9)
A:
NA
C2:
PF076779=A2M_recep=PU(30.3=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCTGAGATACAACATTCCC
R:
TCCAGGCCTCTTACAGACATCC
Band lengths:
230-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]