BtaINT0010567 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101502645-101503008:-
Coord C1 exon
chr5:101502881-101503008
Coord A exon
chr5:101502736-101502880
Coord C2 exon
chr5:101502645-101502735
Length
145 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTGCTTCTTTCTGCCCTCAGTTA
3' ss Score
10.05
Exon sequences
Seq C1 exon
ACGGTGCTGAGATATAATATCCTCCCTCCGAAAAGTCTGGAGGCCTTTAGTCTTAGTGTGAAAACAACGGGATCTCAGTGTAAGCAACATACTTCACTTGGATCCTTGGTGCTGACGATCCAAACCAG
Seq A exon
GTGAGGAGAGCAGAGAGGGGTTGGGGGACATCTAGAATAGGGTGGCTGAGCTGGAGTGTGTGTGTGTGTGTGTGTATTGTGAACACACAGGGTGCTGAGAGGGAAGACAATGGGCTGACACAGGTTTGCTTCTTTCTGCCCTCAG
Seq C2 exon
TTATGTGGGGAGTCGCAGCTCTTCCAATATGGCTATTGTGGAGGTCAAGATGCTTTCTGGATTCAGTCCTGTGGAGGGCACCAATCAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGCTGAGATATAATATCCTCCC
R:
TAACTGATTGGTGCCCTCCAC
Band lengths:
218-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]