DreINT0000086 @ danRer10
Intron Retention
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21286633-21286933:-
Coord C1 exon
chr15:21286812-21286933
Coord A exon
chr15:21286715-21286811
Coord C2 exon
chr15:21286633-21286714
Length
97 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGA
5' ss Score
7.3
3' ss Seq
CTTGTGTTTGTGTTTTACAGATA
3' ss Score
11.43
Exon sequences
Seq C1 exon
ATGGCTCAGTTCTACAACATTCTCACTCCTACTGAAGCTAAAACATTAAGTATTGATGCTGAGGTTGAGGGAGATTGCAAGAAAACCTTTGGAAAAAGTCTATTGTTAAATTTCACTGTGAC
Seq A exon
GTAAGAAGTGTAACTTTACACTATAAAACCTGATTATGGTTGTGGCTTTAGTTTATTCATCATTAACTCTGATGATTCTTGTGTTTGTGTTTTACAG
Seq C2 exon
ATATGATGGTCCACAGGCCAAAACTAACATGGTTATTGTGGACATTAAACTCTTATCAGGATTCACAGCTGATACGTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685:ENSDART00000155787:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130431=DUF3903=PU(91.4=78.0)
A:
NA
C2:
PF130431=DUF3903=PD(5.7=7.1),PF076779=A2M_recep=PU(20.9=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCTCACTCCTACTGAAGCT
R:
ACGTATCAGCTGTGAATCCTGA
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]