GgaINT0121139 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79208477-79208847:+
Coord C1 exon
chr1:79208477-79208534
Coord A exon
chr1:79208535-79208744
Coord C2 exon
chr1:79208745-79208847
Length
210 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CATTTGCCTTTCTCCCTCAGCTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTATCCTGTGAGAAGAACAGAGAAAACCCAAGCAGGTGTTGCCATCTACTTGGACAAG
Seq A exon
GTATGTATGTGCTACTAGAGAATTTGCAGGAGTAGAGGACACTGGAAGAGCTGTGTGGAGAATCGTGGACTGGGCTAGCAGAGCAGAATTCATCTTGAAGTCTTGCCTTTGACTCCGTAGAGTTGTCATTGCCTATCTTCAGGATCACATTTAGGTGAGGAATCAAAAGAGCAGCTCAAAAGTGAACTGTCATTTGCCTTTCTCCCTCAG
Seq C2 exon
CTGAGCCATGTGTCTGAGACATATGTCCTGCATCTAGAAAGGGAAATTGAAGTGACCAACCTGAAGCCAGGACAAGTCAGAGTCTATGACTACTACCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(14.6=65.0)
A:
NA
C2:
PF076779=A2M_recep=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGAGAAGAACAGAGAAAACC
R:
TGGATGGTAGTAGTCATAGACTCTGA
Band lengths:
157-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]