GgaINT0121140 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79208745-79208981:+
Coord C1 exon
chr1:79208745-79208847
Coord A exon
chr1:79208848-79208939
Coord C2 exon
chr1:79208940-79208981
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTCTCCTGTCCTGTTGCAGAGG
3' ss Score
11.24
Exon sequences
Seq C1 exon
CTGAGCCATGTGTCTGAGACATATGTCCTGCATCTAGAAAGGGAAATTGAAGTGACCAACCTGAAGCCAGGACAAGTCAGAGTCTATGACTACTACCATCCAG
Seq A exon
GTGAGTGTGGTACTATGGGCTGCCAGGGCTCTCTGGGTATTCGTGCTTGGCTTTGTACGAAGATAAATTCTGTCTCTCCTGTCCTGTTGCAG
Seq C2 exon
AGGAGCAGGCCCTTGCTGATTATAATGTTTCCTGCATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.2=100)
A:
NA
C2:
PF076779=A2M_recep=PD(7.9=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCATGTGTCTGAGACA
R:
CAGATGCAGGAAACATTATAATCAGC
Band lengths:
143-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]