GgaINT0123452 @ galGal3
Intron Retention
Gene
ENSGALG00000024348 | F1NFX9_CHICK
Description
NA
Coordinates
chr16:281122-281765:-
Coord C1 exon
chr16:281490-281765
Coord A exon
chr16:281395-281489
Coord C2 exon
chr16:281122-281394
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACAACATCACCCACCTGCAGTGC
3' ss Score
5.6
Exon sequences
Seq C1 exon
GGTCTCACACGCTGCAGAAGATGTTTGGCTGTGACATCCTGGAGGACGGCAGCATCCGAGGGTACGATCAGTATGCATTTGATGGGAGGGACTTCCTCGCATTTGATATGTACACGATGACGTTCACTGCGGCGGATCCAGTGGCAGAAATCACCAAGAGGAGATGGGAGACAGGAGGGACGTATGCTGAGAGATGGAAGCATGAGCTGGGGACTGTCTGTGTTCAGAACTTGAGGAGATACCTGGAGCATGGGAAGGCAGCGCTGAAAAGGAGAG
Seq A exon
GTGAGGATGGGAGGGGGACGTGGGGCTGGGCTGGGTGTGGGGCAGAGGCTCAGTGTGGGGTGCTCAGCCCGGCCCACAACATCACCCACCTGCAG
Seq C2 exon
TGCAGCCCGAGGTGCGAGTGTGGGGGAAGGAGGCCGACGGGATCCTGACCTTGTCCTGCCACGCTCACGGCTTCTACCCGCGGCCCATCAGCATCAGCTGGATGAAGGACGGCATGGTCCGGGACCAGGAGACCCACTGGGGGGGCGTCGTGCCCAACAGCGATGGCACCTACCACACCTCGGCTGCCATTGATGTGCTGCCGGAGGATGGGGACAAGTACTGGTGCCGTGTGGAGCACGCCAGCCTGCCCCAGCCTGGTCTCTTCTCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024348:ENSGALT00000022037:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(50.0=94.6)
A:
NA
C2:
PF0765410=C1-set=WD(100=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGGAGGGACGTATGCT
R:
TGGCAGGACAAGGTCAGGATC
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]