GgaINT0123835 @ galGal3
Intron Retention
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5674705-5683103:-
Coord C1 exon
chr17:5682965-5683103
Coord A exon
chr17:5674792-5682964
Coord C2 exon
chr17:5674705-5674791
Length
8173 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GTGTTTTTTCTCTCCTGCAGCTC
3' ss Score
13.23
Exon sequences
Seq C1 exon
AACCGGTCTCTTCACACCCGACATGGCCTTTGAGACCATTGTGAAAAAGCAGGTGAAGAAGATTAAAGAGCCTTGCCTGAAATGCGTGGACATGGTTATTTCGGAGTTAATCAATACCGTTAGACAGTGCACCAAGAAG
Seq A exon
GTAACCAGAGGCAGCATGGAGCTGGCACCTTCCACCCCTCTCTCTGGCTGCGGCACAGCACTGTGACCGGGGCAGGGATTTGCCTGCAGCGGCACTCGGTGTTTCTAACCACCTCCTCAGCATGACTAGACCTGAGCGGCACCAGCCTGGGACGATCCAGCCAACAAGCCAAACAGAAAGGGGAGCACAGTGAGATGTGGGCAGTGGGCTTGTTCCTGGAATGCTTTAGAGCAGAGGGATACTGGAGATGTCCCCTCTGTGCCTCCAGTTTCTAGCATGACTCCGATTCCTTCCTAAGCCACGGGTATTTCTTCTTATGGAGGCTACATTGGACTTAAATTTACGATTGAGTTTATTTTCCAAGCCAGAAACTGGGATTTAAATTTTGTTCCCTCTGCTCTCTTAGGAGGGTTAATCCCAAACAAGCCTTTAGTATCAGGGCAGAGAGCTCCTGGCTGGGTGTGTGGGGCTGAACTGCAGAAGCTACAGTGGTTACAGGGAAGCGTTCCTGTGGTGTTTGGCTTGGTTTTTGGTTGGCTTGGTCCATATCCTGTTCTGGAAGAGCAGCACATGGCTGAGAAGGATCAAGTTAGAAAAGTCAGTCTACCTTTGGGCTCTTGGAGAGGGCTCCAGGCTTTGTCATTTGGGCTTCATACTGGTATTTATTGGAGGTTGGGGAAGGAGCCTGCCTTAATTCTGCTCTCTGGATGCGGAAGCTTTTGTTTCTGAGGCTGGGGTTGAAAAGCAGCAAGATAGGAAGATACGTGCCATTCCTCTCAGCCATGGCTCGCTGCTTCAGCCAGGGCTGTGTGCTGGTGAAAAGACACCCGAGTTAGGATGGGAGCATGGGCACTGGAGACTGGAATCGCCACGGGCTGTTCAGGTGCAGGTAAATGGGCATTGGAGGAGTGTCTGGAGCCACCTCATCCCTGCAGGGGTGGGGAGAGGTGCCCAAGTGGTGATAGCTGCCATCACTTGCAGAGATGCCTAGCCCTTAGGGCCCGGAGCCCCTGTAGGAGGGCTCAGGCACGCAGACACACTCTTTGCCCCCCAGGACAGCCTGGAAGAGCAAAGCAGATGCAGGGAGTTTGCTCAGGTTTCTAGCGTGCTGGAGGAGCTTTCTTTTTCTGTCCTGCTGTTCTTTCTTGGGGTGTGTGACTGTGGGGAGCACCCAGAAAATTGCCATTAGAGCCTGGTGACAGGTAAGCACAGGCCCTCAGGCTGCCAAGTATCCAGAGTTGCCTGCTAACTGGATCAGAAGGGCTCTCCTTTTCGTGCCCTCTGAAACTTCTCTTGGATTGTCCTTCATCCATCAGTTACTGTTCAAAAACCTCCCACTCATTGTCTGTGTTTGCCCCCTTCCATACATTTCCCACTTTTCTGCATCATTTTTGTTCCCTCTTTACCGATGATGCTTGCAGTGAAGGACTGTCTGTTCTGACAGCAGCAGCTTCCTCCAGTCATTTGGTGGTGGGTACAGCAGGCTGGGAGATAAGGGGAAGAAGAGACCGTAGGAATGTGAAGGGGGGAATGGTGAAGGCTGAGGATCAGTGTTCCACTTCAGCATCGATCCCACTGCTCAGAATTTGGCTGACTGCAGTGCTGGTTGCTGTGTGTGCCGGTAGTCATGGTTACAGCTTTCTGTTTCGGGAAACAATATCATCCTTCAGGTGGTACGTAGGTATGTGAAGGCCCTGATTTGTTTTGGTTGTGTGGGTTTTTGTTTGCGTGAGGACCCATGAGCCTGGCCTTCAGAGCAGTGTGCAGTGCTGGCTTAGCAGGCTGCTGGACGTGTAGGAATAGCTGCGAGGTCTGAGGGTGTGAATGGAGCTCCAGGAGTGCCTTTGCTTTGCTCTGAACGGGCTGCTTCGGCACCTTGAGAGGCTGCTGGGTGAAGCTGAGTCCTGTGGTGTACTCTAAACCTCTTTGCTGCTTAAAAGGCAGATTGCTGTTGGTCCTATAGCGTGTTGAAGAGCGTTATCATAGAGTGGTGTTGCTTGGGGTTTTGCAGGCGTTATCTGTAGGGATACAAAGAGGTACATAACTGATTTTAAATGGGGTGGTGTTTATAATTAGCTCTGAATTGTCAGCTGTAAGCACCCCAGGTCTGACTAGGAACTGCACCTTGGGAATAGCAGGATCCCATTCCTGTGTCCAAGGCACGTTATCCCCCTGAAAGCACTCAGAACTCTATTGTGCTGTGCTAAAAAGGTAACTGAGATTGTGTCACAGAGAGCACCCTGGTAGGAGCTATAAAGTGTTAAAGATGTGCTGGAGAAATGTCTTTGGATGCAGTAATATTCTCAAGTTAAGATAACCTGTCTTTTTGTAACTGCAGTTTTGTGCAGTGTCAGTGGGATGGAATACCTCCACATAAACCTCAGCAGGCCTGTACTGGGCCTGGTGCTGCAGGTTGGCTGGTGCAGGATGTGCTTTGTACAGCTGTGGGTGCCCTGTAGCTTGTTTGTATTTCCTAAGCACTGGCTACATCTGGTCTTACTGAGGAGTTATCTGTTGCCAGGAAGGCGAGTAAGGCAAAAGATGCTCTGTAAATGGAGTGTTTTATCTGAATCTCTGAGCCATATCCATTCCATTCAGTCCTCCTGCCAGCACGAGATGTGAGTGACAAACCTTTGAGTCTTAGCTTAGCTCCTGTGCAGGCCCAGAGGAAGAAAAGCATGGAAAGGATGACCATGGTGTGAGGTGGAGGGGAAGGCCTGAGACGAGGGGAAATGAAGCAGGAAAGACTCAGTGGCTCATTGTGGCAAGCAGCTGTGTCTTAAAATCTGAATGAGCTTTTCTTCAGGAAGAGATCACTTGATCCCTGGGGGTTGCCATCCGCTCATCTTGCTCTTCACAGCTCACCATTTCACCAGCCCAGCTGCTCCCACCTCCTTCCCTCTGCCACATCCATTTGCCTGTAGAGGCTCCTAATAGGTGGCAGTGAACAGGCCCCATAGCAATGCTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTCCTCTTTCCTTCCTCCTCTGCTCTTTCTCTGCTTCGCTCTCTTCTTCCTCGTTGCTTCCTCCCACCCTGCCCCTGCCATGCAGAACGGGCCTCTTCACGCCTGACCTCGCTTTTGAAGCCATAGTGAAAAAGCAGGTGCAGAAGTTGAAGGAGCCGAGTCTGAAGTGTGTGGATATGGTAGTGAGTGAGCTCACATCCACCATCAGAAAGTGTAGCGAAAAGGTAAAGAAACGAAAAACACCAAGAAAGGTCAACGCCCACCCCCTTCCCACACACATTGGTGCACACACCACGGGACCATTGGCAAGCCCAGGGAGAGAGGAGGGATGTGGAGATGCTCTGAAGGAGGGCAGCCATCTGCAGGCAGCAGTGCAGGTTCAAAGCAGTGGATCAGGAGCGGTGGGCATTAGCTGGTGGGCTCTTTGGCTGAGCCATGGGCTGGGACCCAGTGGTTACTCTGTGCTGTGCCCTTCTCCTCTCTGTGTCTCAGAGGTGTTCAGCTCAGTGTGGAACAAGCCCTTCCCTGTGCCAGTCCCTGAGTATTTGGGACTCCTTACTTGTTTTTACTGGGACCCCCTTCCCTAAAAATTCCACACAGGAGAAGGGAAAGAAGCCAAAGGGAATGAACTTATGTCCCCTCACAGCGTGAGTTTCAGCAGGCCTCACCTTGCCTACAGGGCACTGTGTACAAAGCAGCAATCGATTCAGGCTCGAAGCAGAAGCTATTCTCCAGCAGATACACAGAGTAAACAGAATAGTGACCCAAGTGACTTGGTGGGGAAAAGCTTTTCCATGCATGACTCCCATTACAGCATTCCTCCTGCTGGTACCTCGCTCCATGGGCTGTGCTCAGTTGAGGTAGTGGTGACACTTTCCCTTTTGCACTGCAGAGCATGAGAGGTGAGGCCTTAGGGGGCAGTCGGAAGGGAAACTGCCATAGGGGTCAGGTGCACGTTGCATAGGGCTGGGGCAGCTGTGGGTCTGCTTCCCAGGCCAGCTTTGTCCAGGAGGGGGCACCACGTGCCTCCTGAAAATCAGGACAGATGTGGCAATTAATTTGTGTTAAATTTACGAGCGAGGGGCCAGAAACATGTCTGGCACAGCAGCAGCACGTTCTGGGAGAACTGAGTTGCAAGGGCTGTTTCACTAGTTATTTTAAGCCTTGAAAATTGCAGTCCTTTTCTTGCAGACTCTCCAACCAGACAGCCTCAAATTGGGAAGGAAGGGAAGATAACTGATACGAGCTCGGTGTGGGAGCTGAGCTGATGAGGCCTGGTTGTGCTTAGGAGCATGGAGCTCACCTCCGTTAAGGACATCTTTGTGCCCTGAGCTCTGCCTGCTGTATTTCTTGAGGACTGCTGTTGCTCAACAGCTGTGGCCAGGCAGAGTGGCTCCATCTCAGCCTGTTTTTCTAATGGGTTTTATTTGATGGCTTTGATTACTTTGGCACTATTATCTACATCTGGCAGAAGGTGGCCCCTTTAGGTGGTGTAGGGAGAAGAATCATGAGAACACCACCTATAGGATCCCAGCTGTGTTGTTGGGCCATCTCATTAGTGGTTTGACAGCCAGAGCTCTGTAGATTTTAACCCATAATGTGGTGGAGGACCCATGGGTGCATTCAAAGGTGTTGCAACCAAAATGTTTCCTGCAAAAGAAGTGATGGTAGGGTGTTGTAGGGAGCTAATGGCCGTAATAAAGCTTAGCCTGAGAGGCCAGAGAGATGAATGTTAGAGATGGGTGACTATGGGAAATAACTGCTTGAATTGCTATGTCTAGTGATAGTAATATTGGGGGGAACAAAAAAACACACAAAAGGAAGGCTTTAATAATAATTAAAGACAAATGCCTACATCTGGTAAGAAGGCTTATCTTGCCTGCTTCTCACTCTGAAAGAGGGTAGAAAGGCAGATCTCTGAAACTGCCATAGACCCTTCTGGTTAGCAACCAGTGTCAGGTGGGTTCTGATGGCTTCAGACAAAGGCCAGTAACTGCACAGGGGCATTAACTGATTTGCAGTGTTTATCTTGCATGTTATAGCCCTAGCTGCTTCACCTGGATGAGAGCATGCACTATTAGGGGAGGCATCTGGAAAAGGCTACTTCAGGACTGATGCTAATTGTAAGGTAACACTCAACCCACTATGATGTGGATTGCTGCTGCCTTTCAGATGTCAAAGCCAAACCTTTGAACCAAGCCCTGCAAGGCTTCATGAAAGGAAGGCAGCTTGGGCGAACACCTTTTGAATTAGCTGAGCAGTCCTGTAGCCTTGGTTTGTTGCTGTCCTGAACTATTGTGTGGTGTTGTTTGTGTGCTGTCGCAATTATTTCATTTCACCCCAGACGGTGAAGAAATCTTTGTGTGTGGTTAATATTGCTGCATAGATGGAATAATACGAGAGTGCTAACAAAGAACGTAGGCAAACCCATCTGTTCCTTGTGTGCGATGGAAGCACAGCTTTCCTGTCTGAAGAGAGATTTGCTGCTGATTGTCAGTGGGTTATTAGAGCTGAGGGCTGAAGCACAGGTTGCCATTAACAGCCATCCTCTGCCTGCTCTGATCCTGAGCTTCTTCCAGTTGGCTAAATGGAGAGCAGCTCCAAAATCAGCAGAATGCTGGTACAGTACAAGCACACAGAGCCTTAGTTTTGGGAGGATGGCATCCTAGCCAGTGTTGTTCCAAAAGCAGGGACTTCTGTGCCAGGCTGCACTGCAGCATCTCACAGATGCAGGGAAGGCCTTCTAAGTCAGCATCCCTTCAGCTGAAGGTCAATCTTCAGTGTGCTGGCACGGACTCCTGGAATGTGAAGAGAAAGGAGCTAAGAAATATTGGGACAAAATGGTTTTCAAAGAGGGCTGTGAGCTTGTATTTGATCAAACAGGAAAATCCAGCTGAAACAGAACTGAAAAACCTGCTTGAACTGTGATGTGATCCCAGGCTGACAGACTTTTAGCCCCTTGAAGGGTCCCTGCTCTCCTGTCTTTCAGAGTCATGGCATTTCTGGGTGCTGTTCATACTGCTGATAACTCCTTGTCCCTCTATGCCCTATTGCATGTTCCCTGGTGGCTGTGGTATCTCGTGGCTTGTCCGTGTCACTTTTCTTTGCCTGCCCTTGCTTCTCCTATGCATGCTTGGGGTTGGAACCTGCTGCTGCATGGGGACTGATGCTGTCAATTTATTTTTGCGCATTAATGTTGCTGGATGACCTGGGTTCTGAATAAGCCATAATGTGTTTTCTTTGTCTGCCTTTGGAATGGTGGGGGGTGGGGGTGGCAGGGAGAGGGTTGATGTGTTTTGTTTGACTTTTCTTTTTATTTGAAGCAAAAAAAAGCTGAGACTTGCTTAGAGATTTTCCAACTTCCTGTTTTTCTGTTTGACATAACTTTCCTATTTATCCTTTGCCAACCCTCCTTTTCCCCCAAGGAAACAGGAAGCTTTGCTTGTGTGTATCTATGAAGCAACCAGCTGCCTGAACCACAAAGATCATGGAGAACACCCAGTTTGCACTTTCAAGACGAAGTGGTGGTGGGGAACACTGACTCTCACTTTTTCTTTTCCTGCCTCTGCAAAGTCATTGGTGTTCAAAACAAGCTCCACGTTTGAAAATAGGCAGTCTCAAAGCTAGTTCTCAAATTCAGTTGCAAGCTACTGCAACTCACTTTGACTGCAAGGGTGCTGAAAGGTTTTGAGGCTTTGTGGTTGGTTGTTAGAAATGCAGGTACTGTGCAGAAGCCCGGCTGCTTTAAGGGTGTTCATTGTGGAGGGTTTCTCGTTTCTCATGTGTGGTCTCTGGGTACTTCTCTCTAAACATAGTCAGTAAAGTGTACTCGGGAATTAATTCCCTTCTCAGTAATGCAGAAAAAAAGAATGTTGTGGGCATGATGTGAATATAGACCTGAGTCCTGCCCAACAAAGGCAGAGGGCAGCACCTTGGTGCCCAGAGCAAAGCACAGCCTTCCTTGCAGTCTGCCAGACCTTCTCTATCAGCATCTGCAGTAGAGACAGAAGTGCTTTCACTTAATACGCCAGCAAATGGGCATTGAAATCCAGTTCCCTCCCCAAGGAGACTTCCCATAGGATTTAGCTGTTTGTAGCGACAGGCCGTTCACCCACGTAGCCAATGAGATGTTGAACATCTAGAGCAATTGTTCAATGAGGAGAGTATCAACAAATGCTAACTAATGTGTGTTCACATCTGACAGGAGACAGATATGGTGGCTTTGGTGCAGGTCTCACCTAGAAGTTGCTGTAGGAGTGAGGACTATTCTTTGAGGCCCAAAGCAAGAGGGAATTACGTTTGCCTTCAGCAGACCTTCAGAAACTTGGAAAATCTGTCTGCAAGTCCAGCTTTTCAGAACTCCCCTTTAAAAAGTACAACAAACTGATTGCAGGGTGTTTGTGTGCATGCCTATGTGCAGGGGGCTGTTCCCCCCCCGCCGTTATACCTCCCTTTCCCTTGTGCACGTGTTTTTTCTCTCCTGCAG
Seq C2 exon
CTCAGCCAGTACCCTCATCTGCGTGAGGAGATGGAGAGGATTGTGACAACTCACATCCGTGAGAGGGAAGGCAGGACCAAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852:ENSGALT00000039847:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(15.5=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]