HsaINT0050627 @ hg38
Intron Retention
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr9:128224251-128234107:+
Coord C1 exon
chr9:128224251-128224389
Coord A exon
chr9:128224390-128234020
Coord C2 exon
chr9:128234021-128234107
Length
9631 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GCCCTCCTGCCCTTCCCCAGCTC
3' ss Score
8.73
Exon sequences
Seq C1 exon
AACGGGGCTGTTTACCCCAGACATGGCCTTTGAGACCATTGTGAAAAAGCAGGTGAAGAAGATCCGAGAACCGTGTCTCAAGTGTGTGGACATGGTTATCTCGGAGCTAATCAGCACCGTTAGACAGTGCACCAAGAAG
Seq A exon
GTAACCCGGAGGCCCGGGCCAGCCCCCACCGCCTCTGCCCCGCCCTGCACTGCTGCCAGGCGCTCCTTCCCCATGTCCCCCCCTGCCTCCTCGGTAGCATGTACAGACCTCAGCGGGGTGGGGAGGCAGGCCACCACTGAATAGGAGACAATGTGCCTCTGAGAGGGCCTCACCCACCCCTGGCCCCCAGGTCTGGGGACCCAGGGATTGGACATGGGTGAGACGGGGATGATGGCTGGCTGTTTACCCCAAGAGCCCACCAAGAGCTCCCCCAGCTCAGAGAATAGGGCTTGAGGGGACCCTGAGCCCCCTCCCTGTCCTCGGAGGTGTCATCTTTGGGAGCTCCAGGGAGGGGTCTGGGGAAACCTTAGCCTTGGAGACAGGTGAAATGCAGGGCCTTCTCGGGCACTGCTCGGTGGGCCTGGGTGGCCAGAGGGGGTGCAGAGGACCCAGGACTAGCAGGTGCCCTGGCTCCCCGCTGTCCTTCATCCTCCCCATACTCATCTCACCCTCACTCAGGACCCTCACACAGGATGCTCACGTAAGACCCTCACTCAGGGCCTCTCCCTCCCTTCCATCCACATCTGGCTTTCCAGGGATAGAGCCCTTCTCCCATCTGCCCCACCATCCAAGCCTCACAGAAGCACGCAGGGAGGCAGGACAGGGAGGACGGTGCCCATTTCACAGCACGAACACTGAAGCTCCAGGAGATCAAGTGGCTTGCCCAAGTCACAGTAGTCAGGAGGTGGCAGAGCTGTTACTTGAAGCCACGGCTCTGGACTCCAAGTCCAGTGCTCCTCGATTCCACCCTCCAGCCTCCCTTCCTTTCCTCTCCCCACTGCTGTCCCGGCCCCTCTCTATCACTACCTCTACTCTTTCTGTCTTTCCTCTTCTCTTTCTGTCTTTTGGTTCCACCAAACCCCTGTGGAGGAGAGGCCAGGAATGCCCCTTGAAGAGAAAGGGAGGGGCGGGACTAGAGCAGGGAGCTGGAGAGGGAGGTCAGGCTGCTATACTGCAACCCTAGGAGGCAGCCTCTGCGCCACGGTTTACGGGAATGGACCCCCCTGGAGTTGTGCAGTGCATGGCCTGGGCAGCTGGATGCGGCAACCCTAGAGATAGGGAATGGTACTGAGGTTTGGAGTCAGGATGAAGCAAATTCTGGGACACTGGGAAACGTAGAATTGAACAGGATGGGTGGATGAGGTCCTGGCCTTGTCCTGGCCTGGGTCAGCTCCTTAGGAGAACCCAAGGCTGTGGACAAAGACGGCACTGGGAGAGAGCAGGCAGCCTCAGTGAGGCCGAGGAGCAGGGGAGCATCCCTGGGAAGAGGATCTGAACTCAATAGGGGTCTTGTACGGAGCAGGGGCTTGGTCCCTCGTACCTCTGGCCATACCTATGGAGCCCAGGGGATGCTTGGCAGCACCTGGGAGGTGCCAACCCCGGGTGGCAAGGGAGGGCCGGTCCCACGCTCACATTGTCTTCTGTTCTCTCTCTCTCTTTATCTGTGTCGATGTCTCTCTCTCTTCCCCCGTGCCCGTGCCATCCTCTCCACCCCTGGATTCCTGTCTCTGCTTGGCTTTCACCCACTTCTCCTCCCCACCCACGGCTGCTCCTCCTCCTGTCCCCACCTCCTCCCCGGGTGCAGGACGGGCCTCTTCACACCTGACCTCGCTTTTGAAGCCACAGTGAAAAAGCAGGTGCAGAAGCTCAAAGAGCCCAGTATCAAGTGTGTGGATATGGTAGTCAGTGAGCTCACAGCCACCATCAGAAAGTGTAGCGAAAAGGTATGACGGCCGCCTGGGCGGGGCTGGGCCTGGCCGTCCATTCCTTGTGGCCACAGCCTCCCGTGGGCAGAAGGATCTGCTGAGCCGGCCTCACGGCTACCCGCAGGGACCCAGCCCTAGTGTTTCCTGCCAGTTTCTAACCCTGGGTACTTGCACTCATGACCCCTCCAGGCCCCCATCCCAGAAGACTTGACTCCAACCCAAGCCTCCTTGGTGGCACCTATGCTAGTGATGAAGATGATGTTAAGGAGATGGCAGCTGTTTACTGAGCACCTACTATGTGCCAAGCACACGCTAAGTGCTTGCCCTTACTATCTGACTCAGTCCTCTCAACCACCCTAAGACGTGGGTAGTGTTGTTATTCCCATTTTGCAGATGGCAAAACAGAGTCTCAGAAAAGAGAAGCAGAGTGTGATTCAGTTTTAGGAAGGACAGAGGAAGGGGTCTGAGGTCAGGGCCTCCTGGGCAGGGGGAGCTGTCCTAGTTCCTCAAAACCAATTTGCCTGAAAGCATATTGGATTACTCACTTTACAGTAATCCGTGCGTGAGAGACAGGGGCGGTCTCTTTTGAGTTGTCTGTGACTTTTTAGATGCCTTTTTCCTATTTGTCTGCTTTTGGGCATTTTGAGGATTTTTAGCCAGGTTGTCTAAAGCAGTTCTTCCCAGGGGAGTGCGAGAGAATCAGTTGCCTGCAGGAGCTTCTCCAGCAGGCTAAATCAGAGGTGCCAGGGGTGAGCCCAGCCTCACCTATATCTGAAGGACTTCCCTATGCTGGTGGGTGGAGGCACATCCACCTTAGCATTGAGTTTCAAATAAGCATCAATCATCTCCATTCCTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAATCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACCATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTATTCTCCTGCCTCAGCCTCCCGGGTGGCTGGGATTACTAGCATGTACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCACGTTGGCCAGGCTGGTCTTGAACCCCTGACCGGAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTAGGATTACAAACATGAGCCACCGCGCATTCTTTTTTACTGAGCAGTGTGTTGTGTAATCCTTGTATGTTGCTACATAAAGATTGGTCTCATGCCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTCACTCTGTTGCCTAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCACTTCCTGGGTTCAAGTGGTACTTCCACCTCAGCCTCCCAAGTGGCTGGGACTACAGGTGAGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCACCTTGGCCTCTCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCTCAGCCAGTCTCATGCTCTTTAACTACTGAGTTGTATTCCACTGTAGAAATGTGGCATGATTTATATGTTCAATGTCCTCTTGACGGACATTTAAGTTTCAATTTTTTTTTTTGCCTTCACAAACGATGTTACAATGAACATCCTTATAGATGTATTTGTAGTATTTATCCCATTGTTTTTTCTTTCTTTTTTAGAGACGGGGTTTTGCTGTATCTCCCAGCATGGAGTGCAGTGGCACAATCATAGCTCACTGTAGGCTCAAACTGGGCTCAAGCGATCCTCCCGCCTCAGCCTCCCAAGTAGTGGGACTTCAAGCACTAACCACCACACCCCACCCAGCTAATATTTTTGTTTGTTTGTTTGTTTGTTTTTGGTTTTTTTTGAGACAGAGTTTCACGCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCCATCTCGGCTCACTGCAACCTCCACCTCTCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCTCCTCCCACCACACCCAGCTAATTTTTCTTATTTTCAGTAGAGATGGGGTTTCATAATGTTGGCCAGGCTGGTCTTGAACCCCTGACCTCAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCCCTCCTGGCCTAATAATTTTTTTGTTAAGACAGGATCTTACTATGTTGCCCAGGCTGCTCTTGAACTCCAGGCCTCAAGCAGTCCTCCTGCTTCAGCCTCCCAAAATGCTGGGTTTATAGGCATGAGCCACCATCTGGCAACAGTGGCTTCTTGATGGACATTTGGGTTGTTTCCAAATTTTACCATAATCACTGCTTTCCTTTTGGAATGAGAGTCAAAGTGTTTCATGGTTTTTAAATGTTTATATCTAGTAATCAATCTTCTAGGAATCTATCCTAAGGAAACAATCGCAGAGAAAGAAAAGCAAAACTATCCACAGAGATATTCATTGTCAGGTTATTTAGAATATTGAAAAACTGGAAACTATCTGGCCAGGCGCAGTGGCTCACGCCTGTGATCCCAGAACTTTGGAAGGCTGAGGTGGGTGGATCACAAGGTCAGGAGTTCAAGACCAGCCTGACCAATATGGTGAAACCCTGTCTCTACTAAAAATGCAAAAATTAGACGGGCATGGTGGCACGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGGAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAACCAAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAGAAAGAAAGAAAAAGAAAAAGAAAAACTGGAGACTATCTAAATATTCACCAATAGGAAAATGGTTAAGTAAACTGTGATAAATCTATTCAATAGAATATTATGCACCCATTAAAATGTTTATATAGGCTGGGCTCACACCTGTAATCCCAGAACTTTGGGAAGCTGAAGCGGGAGGATTGCTTGAGGCCAGAAGTTTAATACCAGCCTGGGCAACATAGCAAAACCCTGTCTCTACAAAATTTTTTTTTTTAATTAGCCAGGCGTGGCAGTATGCACCTGCAGTCCTTGCTACTTGGGAGGCTGAGGCAGAAGGATGGCTTGAACCAAGGAGTTCAGTTGCACCACTGCACTCCTGGGTTATTTTAGAGACCCTGTCTCTAAAATAAATAAAAAAGAAGTTAGAGACCAGCCTGGGCAACATAGTAAGACCCTGTCTCTACAAAAAATAAAAAGATTAGCTGGGCATGATGGCACACGCCTGTAGTCCCAGCTACTTAGGTGGCTGATGTGGGAGGACTGCTTGAGCCTGGAAGGTCGAGGCTGCAGTGAGCTCTGATTGTGATCACACCACCATATTCCAGACTGGAAGACAGAGCAAAACCTTATCAAAAAAAAAAAAAAAAAAAAAAAGCTTGGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGTCCAGTACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGATCAGGAGTTTGAGACCAGTCTCGCCAAATAGTGAAACCCGTCTCTACTAAAAATAGAAAAATTAGCCGGGTGTGGTGGTGGGCACCTGTAATCTCAGCCACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGAAGGCAGAGGTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAGGAAAAAAAAGGGAGGGTGGGTGGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGAGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACTCTGTCTCTACTAAAAACACAAAAATTAGCTGGGTGTGGTGGCGGGTGCTTGTAATCCCAGCTACTCGGGAGGCTGAAGCAGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCAGTTAGCCAAGATTGAGCCATTGCACTCCAGCCTGGGTGACAGATCGAGACTCCGTCTCAAAAAAAAAAAAAGAAAATTAAAAATTAAAAAAAAAGATGGGATTCACTTGTCCCTCCACAGCATATTGTTGGGAAAAAAAAAAAGCAGGTTTCAGAAAAGAACGTATGGTATTTTGGAGAAAAAATAATATATGTGAATGATAAAATCTCAAAGGCGTATTCACCATAGGAATCTTTTTATTTTCTCTTCACAAATTTTATTTATTTATTTATTTCTTTATTTATTTTTATTATTACTATTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGCAACCTCCGCCATCCAGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTAACTGGGATTACAGGTGCCCGCCATCACACCCAGCTAATTTTTTGTATTTTTAGTAGAGACGAGGTTTTACCATGTTGGCCACGCTAGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACCGTGCCCAGCCCACTTCATAAATTTTAGTCATGCTCTAATCTTTTACAGTGAGTCTGTGTGATTTCTTTTTCTTTTTTTTGAGACAAAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCCTGGATTCAAACGATTCTTATGCCTCAGCCTCCTGAGTAGCTGTGATTAAAGGCATGTGCCACCACACCCAGCTAATTTTTGTATTTTTGGTAGAGATGGGATTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCTGCCTCGACCTCCCAAAGTGCTGGGATTACAGGCATGCGCCACCATGCCCTGCCGTCTGTGTGATTTTTATGAGCAGAAAAAACTGATCAACAAATATTTGGAAAGGAAAGCTTTGGTCTAAAAGGAGGAAACTGATACTTTTGCCTTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGAATTTCGCTCTTGTTGCCCAGGCTAGAGTGCAACGGCACGATCTCAGCTTACTGCAACCTCCACCTCCTGGGTCCAAGTGATTCTCCTGCCTCAGCCTCCGAGTAGCTGGGATTACAGGCATGTGCCACCACGCCCGGCTACTTTTGTATTTTTAATAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAATGTACTGGGATTACAGGTGCAAGCCACCGCAACCGGCCACTTTTGCCTTTTGATTGGTTTAGTGGATCATAATTATTTTTTTCCTTATAGGCAAAACTCACCTTTGCCTATCTTTGTGTATATATTTTTTCCTCCCCTCGAGTTTTCTAAGGTTATCAAGTCACTCCTGCCAGAAGTTTAATGAGTGTTAATAAGTGAACTCTCATTACTGCCAGCCCTGCTGGGATTAGACTTGCCATCTCTGAGTGAAATGAAGAGTTTAATGTTGGGCATGGGATGTGCTGCTCAGTTCTCTCAACAACTCTAGGAGGGAAGGTGTCATTACTACCCCATTTTCCACATGGAGAAACTGAGGCCCAGAGAGGTCTGGTCATTTTTCTAAGGAGAGTCAGCGGACAGCGGCTGGCTTTGAACCCAGGGCTGAATGGCTCCAGGGGCTGTGTCCCTGACTGCTAACCCGGTGGGCTCCAGGCTGATCGCCCCCTCAGCCAAGGGCTGAGAGGGGAACGTTCCTTTTGAAAAGCTGGCGGAACATCCTGGAAATGTTCAGAGGCAGCCAGAATGGAAAAAGATGCTCAAAGGGGACAGAACTTCTCAAAGGGGTGGAGGCTGCCCTGCCATGGGTGACACGTGGAAAACTTGAGACATGTGACATCCAGGCGGTTAGTGGGAGAATTGGTCATGCTCTTTGGCAAATTGCGCCCTCCTCCTCCCTCCTTCTCCCTGCTCCTCCAAACTCTACCCTGGGAGGGAGCACTTGGGACCACCTCAGAGGAGGCCTGGTGGCTGTGACCCAGTCCCAAATGTCTGCCCAGACTTGGAGACTGCAAAGAGCGGGAGCCCTTCCTTGAGCCTCAGGAGCAGTGGGGTTCACAGGGCCCCTCTAGTCACCGTTTTTAAGCCCCTGGTCTCAGACTGCCCCTCCCTCAGGTCTCCTGAGCTTAGCCACATCATCCACGCCCTTGGCACAGCCACGGGATGATGGGTGTGATGCGGGCATCCCTCGTGTTGGCATCCTGGACCGATATCCAGGGCCCTGCTTTCTCCCCATCCTCCTGCCTCTCCCATGCCCCTCCTCAAAACTCCTTGGCCTCCATCCTGCCCTCAGAATCACCACCTGTGACTCAGGCACACCAATCCCTGGGCCTCTTCCTCCACTGGGGGACCCACCTGAAGGGCCTGACCCAGCCACGGGAAGAAGGACGAGGAGCGCTCCCAGCTTTGCCCCATCGTGCTGCCTGGGCCCCAGGTGGCCACCGCGTGGAGAGGGTGGGCCCACAGGACTGGAGCCCCTGGGGGTGGGCTCCCACCATCAGAAATGCACTGAGTCTCCTCCCCGGAAGAGCTGATCATGGGCCAGAGGGCTGAGGACCCTGTGCCACTCACCCTGGCATCCATCCTTCATTCATTCCCTCATTCTCCAACACGCCCTCTTCCAGCACTGGCCATGGGCCTGGCCCTGCCCCAGCCCTGCCTCGGGGACAGTTGCCACCCAGTTGATTGGAGGAGGTGGAGTGGGAGAGGAGTGGAGAGAGGCCCCTAACTCAGCTCTCAAGCAGTCGGGGCAGGCTTTCTGGAGGAGCTGAAGTCCGGCAGAACCTTGTAGTCAAGTGAATCACCTGGGCTGTGCCCAGAGCCCGACTGAGCTGAGGGCACGATTCGCAGGCAGAGGGGGACGGGTTTGGAGCAACTTCCCCTTCAGCCTCCCTTCATAAGAACTGGGGGGAAAGAGGTGCTGCTGAGCTCCTACCCCAAAGGAGTGGGGTCGAGACAGTGTGGCTGGCCAGAGCCGGGCAGATGTGGCTGGGGATGGTGGTGCCGGGCAGGGGCATGCAAGGGAGACAGAGCTGAATGGATTCCACCAAGAGGGCCAGGGCCCAGCCAGGCCCCGCGGGGTACTGCTCATGCTGCTGGCCCCCGCCTTGCATGTCCCCCAGCCCTCGCATGCTTTTGCTTGTGTTTCCTGCATGTCCTCTGGTGTGACTGCTGGTTTTCCCCTGAACCCCCTCCCCAGCTCTGACAAGGAGCATTGCCTGTCCCAGCCTGACTCAGGAGGCCAACTGGCACCTTGGGCCCTGTCCTCCCCCGATTCCTCCTGGATAGGAATCCAGAGGCTGTCCCCTGCCTGATTCCCCATCTAGCTGTCCCTCCACGCCTTTAGGAAGGCACAGGGTAGCCCTGAGTATGAGGGAACACCTTGGGAGCTAACGGTCCCCAGAGGCCTTAACCTAACCAGTCTGCGGGGCAGGCTCATTCCCATGGCCTTTCTCCCACGGGAACCACCCCTCTGCCCTGAAGTTGCCCAGGTAGGCCAGTGAAGAGGGCCCGGAACCAGGAAGACCCTTGAATCACCATTTGGAACCCACACTTGGGGGAAAGGGGTGGCCGTGGCTTGGTGCCATCAGCGTCCTGGGACCCTAGGTCTCTCTTCCCCGCGTTGTGGGCATTCTGTGTGTGCCTCCCACCCTGCGCCGCGGATCCCTGGACTCGTGGGGTGTGGGTGCTCCCTGCCCGTGCCCTCTGTGTACGTGGCTTTCTGCCCTCCTGCCCTTCCCCAG
Seq C2 exon
CTCCAGCAGTACCCGCGGCTACGGGAGGAGATGGAGCGCATCGTGACCACCCACATCCGGGAGCGCGAGGGCCGCACTAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976:ENST00000372923:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.156
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(15.5=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(1.0=6.9),PF0103115=Dynamin_M=FE(40.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development