GgaINT0123847 @ galGal3
Intron Retention
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5648962-5654473:-
Coord C1 exon
chr17:5654437-5654473
Coord A exon
chr17:5649419-5654436
Coord C2 exon
chr17:5648962-5649418
Length
5018 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
TTCTCCTGTTTTGTTTCCAGCCG
3' ss Score
9.67
Exon sequences
Seq C1 exon
AATCACTATCAGTGACCCCTGAGGACTGGCAGCCACG
Seq A exon
GTACGTTTTGCACTCTCCCTGCGATGCATGAGTCACTGTGTCCCCATCCTCCATCACTCTGCTCTGCAGCTTACCTCTGCTGCCTCGTCCTTGTGTTAGTCAGAGTCCCTTGTCCAGTGAATCACCTCTGCCAGGATCTTATGAAGGGAGGAGTCTAGAACAGAAAGGCTGGCTGATCAGAGATGGAGCAGCTGCTTGAGCTGCAGGAGCTGGGAAAGCCCCGGTACCTGACTTGTGGTTACTGGAGGATCCTTTCTCCGCCCTCAGGTAGAAGGGATGGGATGGAGGAATGAGCTCTGACAACGTGGTCTAAACGGTGTGTCTTTCATTTGGCTTATATCCACGCTGAGTGGGAGATGAACTGAATGAATTCTGTTTTGATCCTGTTTGTCAGCTCTGTTAGGATAGAGGTACAGACCCGGGGAGCTGTCAGTTCAGACTCCTCTGCTTACATTTTAATGTCTCACTGGAGAAGTGCTCCCTTCCTCAGTGTGCTTGTGGAAGACAGGAGGTATTTGGGTCATTAACAGCAGGACTTCCCTGTCTGGGTATGGGATAACTCTGACACTGAACGTTCCCTGTTATGCTTCTGTCCCATAATCACAATTAGAAGCAGACTCCCTTTGTTCGTTCTCCACTTGACCCTCTACCTCTTGTTACTCTTCTGCCTCTGTTCAGTCTGCCTTCCCTCCCTGCCCTTGCAAGAGGAAGGGTTTTGTGATCTGTATTCTCCCCGAACCTCTGCTTGGGTTCCTGCCTGCTTCCCTCTCCTATCCCTGCATTTTGCAGCATTGTACTGTAATGTAGCAGGCTCTTGGGCCAGCCTCATGTCCATTGTGCTGCCCTATATTCAAGGGCCAGTTCTTCCTTGTCCCCTCAGTGGTGCAATGATGGAGTTTGAAGAGGCAGATATAGCAAATGCTCTCAATTTTTTCCCCTACAAACCGCTCACCCTAACTAGCAAAGAGGCAGAGGGGCAGAACAGGGCAGGTGTGGCTGTCTGGGGCTCCTTCCCAGTTTCTCTGTTTCTAGAAGTGAAAGGTCTGACTCTGAGAGGAATGGAACAGCAGCAGCTCCTCCAGCTTTCCTTGGTGCTGGCTGGGGGAGCATATGCCACAGTCCTGTCTTAATAGGAATAGCACAAGTTGCAGTCCCCGTCTCAGGTGAGGAGAGCTCCCAGCTAGCCTTCATCTGCAGTAGGTGGTGTCAGTGCTGCATGTAAGCAGCTGAAGCAGAGAGGTGCTGCCTCACATCACTCCAGTGCAGTGATTGTTCGCTGGTTGATGTGTTCTTTAAGGACGTCATCTGTCAGCCCTCCCCATGGATGACGTACTGCAGAGGTGCTGGAGCAGCCAGCAGCTTCCTCCAATGCTCTGCCTGCTGCAGGCATCCTGGCAGCCTGAGAAACGTGCGTCATAGTAAATGCAGAGAGGCTTTCTGGTGTCTGCAGCCCTCTGTGGGACTCACTGTCATGGGGCATTCCGTTCTTAATCTGACACCAAGAGCACCAAGGAAATAAAAAGCACCCCAAACCTGATAGCAGACCTCGGCAGCCCAAGTGAATAAATGCAGTGTTTCACCATCTCTGATAGGTTATCAGCAGCAGAACTCCTAATGAACTTGCTGGTTAGATAAGGAATGTGACAAGTGAGCGGTGCTGGGGCTGCTGCCAGGCTCTGCCTTCGCTCATACTGGGGGCTGCTTTGAGCTTCCCAGCCAGCAAAGCTTTGCTCCTCATTCTGACAGAGGAGATTGGCTTTTCAGTGTTGTGAGAGGGCTTGGCTAGCAACAGAGACAGACTGAAAGAGCATTGCAGGGGTAAATGGTTATGGAGAGAGAACTTTTTTGTCCTAGGAAATAGTTCTCAACGTCTCTAACCTTACAAGGCAGATAGAACCATAGAAGACTGTGTGTCCACCTGAGCAATGCTGATGCTCCTTTCAGCCCTGTTTGTTATGGCAGGGTCTGGTGGCTTCCCTTGCCAGCACACTGTGTCCCATGGCTTCAGGACAACCAGACCAAAGTCCTGGTGTGCAGAACGCCCTGCAAGCATTTCCAGAAGTGCCTGCTGAGATGCAGGGCAGCACGGCAGCATCTTGCTAAAGCCTGAGCCCGGCTCTGCCAAGTATCAAATCCAACAGTCTGCCATTCCCATGTGAATGTGAGCCACCAGGTGGTGTAGATGTGACCGTACCAACTGTGAGCACCTCTGGGGATGGTGTACAAATCCTGTGTGCCATGAAGCCCATGGTCACAGATTCCCCAGCTGTAACTCACTGCACGTTTTGCTTCTAGGAGATGAGTATTTCAGCCCCCACCTGAGATGCCCATAGTTTCTACGTTTGCTCAATCCCATCATGATTTGCTTTACATGAAAAGCAACCCAAGTGCTGCGCTGATGATGGGGTCTTGCAGTCCCCATTGATGTTCTCAATCAAGGAAATAACATTTCCAAATGGTTTACTGTCTGTTTTTTTTTTCTGTTTTTTCTAAGGTATCATTACCCTCGGCAAGGAGCGAGGGGTTTTAATTGTTTTGAGATCTGGGCTGAATCAATAGAGAGCAATGAACTGCAGGGGTTTAATAAGCAGAGCCATAGCATTGTGCTGATTCACTCCCTGAGGTGAGGCAGCGTGCCCCAGTTCATAGGACAGTGGCTCTTCTGGTACCAGTGTGATTATAGGTTTGCTGTCAGTGCAAAGCACATCTCCACTACGTCAGCATAGCAGTGCAGATCTCCTCCTCTGCCTCTCTCCCGCCCTCCCCCCGAGCTCCTCTTGTACTGGGAGCACCCTCATTTCCAGCACTCCATTGATTCCCTGTAATCCAAACTGAAGCTTGTTAGTGTGGAAGTGTTCGGGCGTTAATTTAGTGACACCTGGTTCTGTTTGATCAGTGCAGATGCTTCCTCTTTATTTACCCCCATCCTGTTTGCTTTGCTCTCTGCCTCCCAGGCAGCTTGGATTGTAAAACCACTCTGGGTTGGTAGTGAACAATTTAATTATCATTATGTTACATCATCACCACGCTGACGCTGCAGGGAGCACTGAAATGGGGGGTGAGAGCAGAGGGGTTGCTTTGTACTTTGTGCTGCTCCCTGCTGTCCCCACAGTCCCTTACATGAAGGAGGTCCTCGAACATGAACTTGTCCTCTCTGTGCTTAAATTGCTGCCCATAGACCTAACTGAAGTATCAGCTGTTATCTGAAACGATAGCGATGGCTGAAGCCTTAATGCAGTCAGCAGCAGTTGCGTTTGCCGAGCCCTAGGAGGAAAGCAGCTCGGTGTCCTGTATGGCAGGGGGGACTCAGGCTCATAGCCCCAAGGGCAGGGGATGGTGCTCCTCCCAGCCAGCGCATCTCAGGGGCCCATCCATGCTGTGTGATGTCATGTGCTTGGTACAGGAGCTCTCTGTTGGCCATGCTTCTCAACTCTCATTCCAGAGGCAGCATCCCCGCTGGCACTGAGTCTGCATTGGATGAACAAATACAGCAAAGCTGTACGTCCAGCAGATTGCCCGGTGGTGATCCGTGCTGTGCAGATAGCCCAGGGCTGGGCCTCGTGCAGACTCCCGCATCTCCTGATGGAGCTGTGCCCTTCTGGTGCTTTGTGCCTCGATTTTTTTCTCTTGCTGCTCAGGCGAGGTGGAGAAGCATGCTTGATTGTGACTGCGATTGCTGTGCTAACCACGGTGTGTGTTCTCTTGTTTTTTTGTTTGTTGGTTTGTTTCCTGCTTTTTCACAGCAGAAGGGGCCCTGCCTCACCTACTCGACCTACCATAATCCGACCGGCTGAACCGTCCCTCTTAGATTTATAACCCGAGGCTGCAGACAGCTGGCGACGAGCGCCGTGCTGGCGGCTTCCCCATCCCACCTCCCCTCCACAGCCACAGTCACTCCTCATCCATCCCACACCTGCCTCCCCCCACCCCTTCCCGCTGTGTCGTGCAGCACTAAGCCTAGTGACCGAGCTCTTCGTCTCCACTCGTGCGTCCCGTGTTGCTTTGTGAGCGTAGCGTAGCCTCCATTCAGTGGCACGGATCCCAGAAGCGCAGGCTGCACGGAGAGGGCAGCCCCAGGGACGTCCCTAAGCCCGAACGTTGGCTGTCCGTCCCGTTCTCATCCGCCTGTCTGGCCTGGATCAGTGCCCTGCCTGCATCACCTAGCTGTAGCACCACCTAGGACTGAGCTGTAGCGACTTCCTTGTAGTTAAGAAGATACGAGCGTGACTTAGAGCATCACGTCTTGACAGCGTTCTTGCTTCTTAGGAACAGATTAAACGTCCTGTGTATTAGTTTGACTTCCATGGTGCAAAACCTCATGTTGGGAACAGTGCAATCTACCTTCAATCAAAGCGAGGCAGGGAGGTGAGGAGGGGGGGAGCTCGATGGGGTGCTCAGCTCCCATAGGAGCCCCGGGGGGTGCTGTGGGTGCAGCCCTGCTCCCGGGGGGCTGTGCTCCATCACACTGGGCTCAGCCCCAACCCAGCAGGGAGAGGGGACAGCTGCTGCCGCTCCCCCCTGCAGACACACAACCCGATGTTTTCAGGGAGTTGCTGCGTGATGTTCTGTTGAAGCTATTTCTGCTTTGGATAAGCACACCTTTCTGTGGTTGTTTTTTTTTGGGGGGGGGGCACTGTGGTGACTTCTCCCGTAGCCTTTTCTTGCATGTGGATGGTACGTGTTTGGGGAACTTGTAACTGTTGCTTATCACAACTCATCCCCTTAAGGCTTGTTTTCTACTCTTCATGTGACGTGTATTAAAAGTACTACGAAACAAAAGGCTCCAGCATTAAAAATATACCACCCTGTGCATCTGGCTGTCGTGTCTCCGCCAGCAGTGAGCCCCCCGTGGCACAGCTCATTCACACTTAGCTCATCTTTTTGCAGTGCAGGTCGTCCTCACTTTCTCTCGTGGCTCCTCTATTGTTCTGACACCGATTCCTTTCTGTATTTTAACCACTGTTTTACTGCTTCTCCACCCTCTCCCTTCCTTTCCCCTTCTCCTGTTTTGTTTCCAG
Seq C2 exon
CCGGCCGGGTAAGGCCAGCCCCTCCCGCCCGGAGAGCCCCAAGCCACCATTTGACATGTAGTGCTGCTCCCTCCGAGACTCTTTGCCTGCTCTTAGCTGTTCTGTCCCGGAGTGTTCTGACTCAGCTCTCACCCGTGGTTTGTTCTCTTTGTATTTGTGACACACACCTATCGGCCGTGACTGTAGTAAAGCTGTTATTGATTCCCAGCCGCTTCCAGGAGTTGAAGTTGTAGTAATGAGAAACATATCTTTACTGTTATAAATATCTATAAATATATATATATATAAAGATGGAAAATCTATATATGTCCAGGTGTTTAAAGCCGTTTTGTGCTTCCATGTGGATATTAGGAAACGCTTGAGTAGGGAAAGAATATCAATATACATATATATATATATACACACACACACCCTGAGAAGTGAACCACATCCCGGTGTTGAGTTTTTGAGCCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852:ENSGALT00000039847:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]