HsaINT0050625 @ hg19
Intron Retention
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:2972]
Coordinates
chr9:131015380-131017527:+
Coord C1 exon
chr9:131015380-131015416
Coord A exon
chr9:131015417-131016932
Coord C2 exon
chr9:131016933-131017527
Length
1516 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
GCTTTCTCTCCAACTGCCAGCCG
3' ss Score
4.85
Exon sequences
Seq C1 exon
AATCACTATCAGTGACCCCTGAGGAGCGTCAGCCATG
Seq A exon
GTAGGTACATGCCTCACCGCCTGCTGCATGAACGGTGTGTCTGCCCCGCTGCACTAGCTCCACACGGGGCGCGCACCTGGGACCTCAGAGCCAGGCTCCCCGCCCCTCCCTTCTGCAGCTGCAGACTTGCTCTTTCCTCTTTCTGTCCTTGTGCCGCTGGCTCTCTCACCTCCCTTCCCTGCGAGCCTCGGGACTCAGTGCCACTGCCCAAGGCCTCCATGGCTGAGCCTGGAGGCTCTTGGAACAGGCTCCGCGCCCAAGCTGGCAGACATGGGTGCTCTCTGGAGCCGTCAGAGAGGGCAGAGAGCTCGTGGTTTATGGTGTAAAGGCTGGGAGCTTGGAGGGGGTCGTGTGTGGGGCTGGACTCTGAGGCGGCCAGAGGCCTAGGAACGTTATCCTGGGCACACCGTGCGTGGTGTGCAGTCTGAGTCATGCTCCCTGGGTAGGGCATCCAGCTCCCAGCCTGGGAGTGCTGAGAGCCAAATCCACCGTAGAGCAGGGGTGAGAGTCAGGGTCCCACCTCCTCTATCTGCCGGCAATCCAGTGGTGACCTAGGGTAAAAGCTTGAGAGTCCCATACACACGGTCATCCCACGACATACCTCACAGGCCAGGCAGGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCGTCATAGCTGCTAGTGTGACTGAAGGCAGTGTCCCTGGCCCCAGCTGAAGCACCGTAGCCAGCCAGCGGGCTCACGCACCTTGGCCTGTTGCTCCTAGGGTCACTTGTGCCATTCAGCCAAGGGGACGACCGTGCCTGCTGGCCCAGCTGAGCTCCGCCCAGTGAGCCCACCCCCCATTCTCCTGCCACTGACTCTCGCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCAGCTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCACTGGCATCCGGCTGCCTGCCCTCCCTGCCTCCCCCAGGGTCCCTTCAGAGGGTCCTGGGTTTTCTGAACACCCAGAGGGGCCTCCGGCGCTCCCTCCAGCCATCCCTTTTAGTTTCACCCTCCTGGTTCAAGCAGTGTTCTTTCTCTATCAGGCCTGGTGGCTGTTGCATGGGGCTCCCCAAGGCAAGGGGTGGCCCCAGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAGCCCGAGGGGGCCGAGCATCAGCCTGAATTGCGGGTGCCCTGCCTGGGTGCCGTGTGAGAGGCCAGCGTGTGTGGGGTGGGGAGGGCCGCCACAGCCCCCAGGCGCTATCTGTGAAGCTACGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCCCTTTTCCAGGAACCTTGCCACACCCACACCTGCAGCCTCCCCTCCCCGGCCCTCCCACCACTGCTGCGGCGCGGCCGGCCCCGGCCGTGTGCTGCGCTTGCCTTACCAGCTCTCTCCTCGCTTTTCTCTCCCGTTTTCTCTCTGCTTTCTCTCCAACTGCCAG
Seq C2 exon
CCGATCGGGTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAAACAGATCCCTCCTCTTCTCGGAGACCTCCCTTTCCAAGCCTGCCTGGACGGCTGTTCTGTGACTTGACAGTGGCTCCCCCAGCCCCAAAGCCAGCCCCCTTCATCTGTGACTTAATCTGTTGTAGTGGTGAGCTGATACATTCAGGTGTGACCGTTGGTGAAAACTTGTGCCCCTTCTGTGGTATGCCCTTGCCCTGTTCTATAAATATCTATAAATACTCATATATATACACACCTACACATGGCCAACCGCCTCGCCTCTAGCGCTGGGAATCAGTCACTGTGCTATCCTTGTGGAGTCTTGTGGCCCAACTACCAGAGAACGCTGTCCCCCGACATCCCACTCCAAAGTGTGCCACCTCCAGTGAGCCTCCTTGTCATGCCCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACCCCCTACCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTTTCTACCAGTCCTGCTGTCCCTCGGCTGAGAATAAAACCCATTTCTGGATGATGGGGAATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976-DNM1:NM_001005336:21
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAGTGACCCCTGAGGAGC
R:
GTTGGCCATGTGTAGGTGTGT
Band lengths:
342-1858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)