GgaINT0123925 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6830094-6831350:+
Coord C1 exon
chr17:6830094-6830293
Coord A exon
chr17:6830294-6831204
Coord C2 exon
chr17:6831205-6831350
Length
911 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CCCATATGCACTTTGTTTAGGTA
3' ss Score
7.07
Exon sequences
Seq C1 exon
ATCTCCAGAAGAAGGAGGGGGCCTTGGCAACACCAGTGGTGGGAGCAGCCACTCCATTTACAGCCTGGATAGGGCCTCTCTTGCGAACTCAGAGAGTGCTGAAGGGCCGGGTAAAAAGTCAGAGAAGGAGCCAAAGTCTGCTGTGCAGAGAGCAAGCGAAAAGGGAGAGACATTATCACAGTTTGAACTGAATTATGGAA
Seq A exon
GTGAGTAGTGTCGTCATCTGTCTGTTTGGTTTTTTTTTGTTTTAACCATTAACAAACTGTGGCTTACTTCAAGCCTGGCTAGTTCAACCCGCTGTAACTTTAAGTATCAAGTTAGATTTGCTTGAACAAGAAAATTCCAGAGTTTCTAAGTAGGGACAACATGGAAGGCAAATAAACTCAAACTTTCAGCCAGATCTGACTCAGTCTGTTAGATGTTTCTGCTATAGAAAGTTTGGTTCTAGAGAGAAATGAGTCTGTTCTGTGTTTTGATCTAAAATGTTACATTTGAAGCCCCCAGATTCTTTCACAGAAGGAAGGAAAAGAGCATGTAAAGTGGGGAACGTGGATTCTGAGCTTCTAGCAAGCAGGCAAGAAATAAATTGCTCTGAAAATATTGGCATTAATAGCATCAGAATATTCTGAGTTGGAAGGGGCCCTTAAGTACCATAGAATCCAACTCCTGGCTCCACACAAGATCACTCACTCCTCTTTGCCAGTGACTCAGCTTTTTGCTGTTAGTGGAACTGAAGTTTTACACCCAAAGTTCATGGATGTTTTCTGAAGGTGGTTGTGCCTGCTCTCTCCTGGCTAATACTTGGAGAGGTGTGAGATTCATTTCCACTAGTAATACATCTGAAGTGACCTGATTTTTAACGCGTTTCCATACAGCCCCAGCAGGAGCATGCTCACCATGAGGCAGAGGAGAGCATACTCTTAGAGGATAACATGACTAGTTGATGTCAACAGGCAACTGTGGCTTAGTTTTCAAAGCTTAGCTGTAGTGCTGCTGACTAAACTTGCTTATTTGTTTGTAGCAAGTGGGTCCTATTTAGAATGCACTCTAAATGAGAGTGAATATAAAGCTTCATATGCGTATGCATTTTTTTATTACCCATATGCACTTTGTTTAG
Seq C2 exon
GTACCATCATTGATAATCGGGTGTCAAGCACAGCAGAAGAGAATGAAGTGGGATCTATGGCGGGTGAAGGCTTCATTGAAGTTCTTACCAAAAAACAGCGTCGTTTGCTGGAAGAGGAGAGAAGGAAGAAGGAGCAGGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=NA C2=0.796
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCAGAAGAAGGAGGGGG
R:
GCAGCCTGCTCCTTCTTCCTT
Band lengths:
342-1253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]