MmuINT0023951 @ mm10
Intron Retention
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32216046-32216757:+
Coord C1 exon
chr2:32216046-32216233
Coord A exon
chr2:32216234-32216611
Coord C2 exon
chr2:32216612-32216757
Length
378 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTGTGTGGCCTTTGGTTCAGATG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTCTCCAGATGAGGCCTTGCCTGGAGGCCTTGGCAGCCATTCACCCTATGCCTTGGAGAGAACCACTCACGCCAGCTCTGACGGTCCTGAAACCCCCAGTAAGAAATCAGAGAGAGAGGTTTCTTTGCCTACCCAGAGGGCTAGTGAGCAGGAAGAGGCCCGGAAGCAGTTTGACCTGGGCTATGGAA
Seq A exon
GTGAGTTGGGGCTCTCCTTTGGAGTGAGGGGTGGTGCAAAACAACCCAGCCTCCTGTCTTATGATGCTTCCAGCCTTGCTGAGCCCCAGTGACATCTGTATAACTTCACAGACTTAAAGGGGGGCATCCAAGGCCACATGGCTAGCAAGAGACTGACCTGGGTGTGTGAATCTGCATCTCTAAAGCCATTATCTCCACGGGTGCTGTCTGAGCACTTGTGGGTTGTGCTTGCAATGTCTGCTCACATGGGCAGGAGGAGGGCGGGGCACCGTGTCTAGATTTCCACAGGCACTGGTGACATTGCTCCTTGGTGAGTGGACTTCATCAGTTGACGGTTGGGTGATTCTCATCTTATTCTTTGTGTGGCCTTTGGTTCAG
Seq C2 exon
ATGCTCTCATTGACAACTGCGCCTCCAGCCCTGGGGAAGAGAATGAAGCAAGCTCTGTGGTGGGTGAAGGCTTCATTGAAGTCCTGACCAAGAAGCAGCGTCGCCTGCTGGAGGAGGAGAGAAGAAAAAAAGAACAGGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262:ENSMUST00000036691:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.766
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCAGATGAGGCCTTGC
R:
CTTCTCTCCTCCTCCAGCAGG
Band lengths:
312-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types