RnoINT0118603 @ rn6
Intron Retention
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11234247-11234962:+
Coord C1 exon
chr3:11234247-11234434
Coord A exon
chr3:11234435-11234816
Coord C2 exon
chr3:11234817-11234962
Length
382 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTCTGTGACCTTTGGTTCAGATG
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTCTCCAGATGAGGCCTTGCCTGGAGGCCTTGGAAGCCATTCACCCTATGCCTTGGAGAGGACCACTCATGGCAGCTCTGACGGTTCTGAAACTACCAGTAAGAAAACAGAGAAAGAGGTTTCTTTGGCTGCCCAGAGGGCTGGTGAGCAGGAAGAGGCCCGGAAGCAGTTTGACCTGGGCTATGGAA
Seq A exon
GTGAGTTGGAGTAAAGGGTGGTGCAAAATAATCCAGACTCCTGTCTTATGATAGCTTCAGCCTTGCAAAGCAGCCTTGACATCTGTATGACTTCCCCGACTTAAAAGGGGCAGCCAGAGCTTGCAAGAAACAGAACTGGGTATGTGAGTCTGCATCTTTAAAGGCCTCTATCTCCAGCGGGTGCTGTCTGAGCACCAGTGGGTTGTGCTTGCAGTGTCTCTGCTCACGTGGGCAGGGAAAGGGCAGGGCACCGTGTCTCGATTTGCACAGACATTGGAGAAATTGCTCCTTGGTAAGTGGACGTCTGAGGCAAGCATGCAGTAGTACATCAGGTGACTGTTGGGTGACTCTCCCCTTCTTCTTTCTGTGACCTTTGGTTCAG
Seq C2 exon
ATGCTATCATTGACAACTGTGGTTCCAGCCCTGGGGAAGAGAATGAAGTAGGCTCCATGGTGGGCGAAGGCTTCATCGAAGTCCTGACCAAGAAGCAGCGCCGCCTGCTGGAGGAGGAGAGAAGGAAAAAAGAACAGGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217:ENSRNOT00000013546:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=NA C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCAGATGAGGCCTTGC
R:
TTTTTCCTTCTCTCCTCCTCCAG
Band lengths:
318-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]