HsaINT0016675 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131477744-131478619:+
Coord C1 exon
chr9:131477744-131477949
Coord A exon
chr9:131477950-131478473
Coord C2 exon
chr9:131478474-131478619
Length
524 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CTCGTGAAATCTTGGTTCAGGTG
3' ss Score
5.92
Exon sequences
Seq C1 exon
ATCCCCAGACGAGGCCTTGCCTGGAGGTCTTAGTGGCTGCAGCAGTGGGAGTGGCCACTCCCCCTATGCCCTGGAGCGGGCAGCCCATGCCAGTGCTGACCTTCCCGAAGCCTCCAGTAAAAAGGCAGAGAAGGAGGCCAAGTTGGCTGCTCCGAGGGCAGGTGAACAGGGAGAGGCCATGAAACAGTTTGACCTGAACTATGGAA
Seq A exon
GTAAGTCATCCTCATATCTTCAGGGGAAAGAACTCAGGCAGAACCAGGGGCCATGCAGTCCTCGGGCCTCCCGAGTTTGCCCTTGCACTGAGTACCTTAGCTTTCGGAACAGCTCGGCCAGGCCCTGGGCTGGGTTCTGGGGCTGTAGAGGTGAGCAGAGTAGGTAGGATTCCCACCGAGTGTTGCTCACAGCCCGTTGAATCCCCGTGACACCCTGCAGCTTCCGGGCTTTAAAGAGAGGAAGCCTGGGGCCCAGAGACGTTCGGTGGTGTGTCCGAGGTCACACACAGCTGTAGGAGCAGAGCTGGGGTTTAAGCTCTTTGCGTGTTCTCTCAGTTGTGCCCTTGGGCCTCTTTGGTTTGGGGTAACAATGTGTTAGATCAGAGGCGGCCTGAGAAAAGTGCGGAAGTCCTGTCCAGGTTTCTGTCGAGCCTGATGCTAGATCTCAGGCGCCTGTTGAATTGGGTTGTTCTTGTCTCCTGGTGAGTGGAAAGACTGTTCCTTCTCGTGAAATCTTGGTTCAG
Seq C2 exon
GTGCCATCATTGAAAATTGCGGGTCCAGCCCCGGGGAGGAGAGTGAGGTGGGTTCTATGGTGGGCGAAGGCTTCATCGAAGTCCTGACCAAGAAGCAGCGCCGCCTGCTGGAGGAAGAGAGAAGAAAGAAGGAGCAGGCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=NA C2=0.617
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCCAGACGAGGCCTTG
R:
CGGCCTGCTCCTTCTTTCTTC
Band lengths:
347-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains