GgaINT0123927 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6831821-6833160:+
Coord C1 exon
chr17:6831821-6831962
Coord A exon
chr17:6831963-6833077
Coord C2 exon
chr17:6833078-6833160
Length
1115 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACCCCTGCGTTTTCTTCCAGCTC
3' ss Score
10.15
Exon sequences
Seq C1 exon
GCACCAGCTAAGGCCCGTGTTCTTCAATCTCGCATTCCTCCTCGATTTGCTAAGAAGCAGAACAGCTTGTGCTTGGAGCAAAGTGATGTAACTGTGTCTGGAAACAGCCTGGGCACAGAAATCTGGGAGAGCAACAGCCCAG
Seq A exon
GTAAGTTTGGGAGTGTTTGGTTTGGAGTATTTAACACAAGCAGGGTGTACATGTTTAAGAGGAGACTTTCTTTTTTCTGATGATGTAAATGGAATGGGTGCTAGCAGACTTCCAGAGTGAATCAGAATCACCAAGGTGATACCTCCAAGATCATCTCATCCAACCATCCACCTACCACCAATATTTACCCAATAAACAATATCCGGTAGTACAACATGTAAACATTTGCTGTACACCTCCAGGGATGGTGATTCTACCACCTCACTAGGCAGCCCATTCCAGCACGCCTGACCATTCTTCCTGAGAATAAATTTTTCCTCATATCCAACCTGAACCTCCCCTGGTGCAACTTGAGACCATTCCTGTATTGCTATTTACATGGGAGCAGAGGTTGACCCCTGCCGCACCACAACCGCCTTTCAGGTAGTTGTAGAAAGCTCTAAGGTCTCCCCTGAGACTCCTGCAAACTAAACAATCCCAGTTTCCTCAGCTGCTGCTCCTTGTAAGGCTTGTGCTCCAGACCATTCACTGGCTTTGTTCCCCTTCTGTGGTGGTGCTCCAGGGCCTTGATGTCTGTCTTGTAGTGAGGGGCTGAAAACTGAATGCAGTACTTGAGGTGCAACCTCACCAGGACTTGAGTACAGGGCAGCAATCACCTCCCTGTTCTTCTCTGTTCAGAACTGTACTGTTAAGCTATCCATCTCCTCTTGTTGGCTATGTCAGTCTCCCAGTCTGTTTTCTGGGTCTTTTTGTAAGATTAAGGTCCTAGCATTTTCTAGGCTTGGTGGCCTTGATCTCTTCAGCCACCTTCTTATTTTCCTTTCCTCTTATCCTTTAGCACTTAATAGGTAGTGCCTGCATTGTTACCCTTTCTCTTTCCTATTGCTCTCACATTCCTGAAGAATTTCTTTCCTCTGTTGTCTATCCTCAACTCTCTACAGCATATCTTCTCTGTCCATCTCAGCTGACAGGGGAGCAATAACTTTTTGAGGTAGTGAAAATATCCTTTCTTAAATCTAGAAATGAAATGTTACTTTTGCAACATGCACAGTGCACACGATGTGCTCACAGTTCTGTTTAAAGCAACTGAACTCTACCCCTGCGTTTTCTTCCAG
Seq C2 exon
CTCTTTCAGTTCAGTCTCCTGGAAGTGATTCCTGGAGCAAGCCTGTAAATACCTTCAATGGTACTGAATCTAGTTCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTAAGGCCCGTGTTCTT
R:
CTCAGTGGAACTAGATTCAGTACCA
Band lengths:
222-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]