MmuINT0023953 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:32072717-32074279:+
Coord C1 exon
chr2:32072717-32072855
Coord A exon
chr2:32072856-32074196
Coord C2 exon
chr2:32074197-32074279
Length
1341 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTGCCTCCCTTCCTTGTCAGCCC
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTGCCTGTCAAAGGTCGGGGCCTTTCATCCCGGATTCCTCCTCGGTTTGCTAAAAAGCAGAACGGCCTGTGTCTGGAGCAAGATGTGACTGTGCCTGGCAGCAGCCTGGGCACTGAGATCTGGGAGAACAGCAGCCAAG
Seq A exon
GTGAGGTGGGTGCCTGCCTCAGGAGAGGCAGGGCACTTTCCGGAGACTCACACCTTTGAGCCGTCAGTATAAGTGTGTCATGACCTATTCCTGGGCCCCAAGCAGAGTCAGTGTTGAGCAGCAGCTGAGCTGACTTGTTGCGGCAGTCACAGGTGGGGGATACATCTCTGGCCCCAGGACTACTCCAATAGACTAGCAGAACCTCTGCACCATGTCACCCTCAGGAAGGCGCCCTGTTTCAGATGGCCAGGAGGGAGTAAGGGACCCCCTTCCTCAGCACAGAGAAGCCCTCTGAATTCCTCCCTCTTGTTTTCTGTGGAAGAAGAAAATTCAGACTAACGGAAGTTAGTTGAAAACTATTTCCTTACATCTTTTTTGTTTGATTTTAATGTCCCTTTCAATTGATCAAGTTCTTTTTGAAGGCCTGCAGTGAGCACGGCCTGCACAACAGGGAGCCTAGAAGATCGCACAGTTAACAAGAGCTTTTCTGTGGCTTCTAAGAGAGCGAGGACGAGGCTGAACCCAGGCTAGAGCAAATGCCACAGTGGGTGACTCATATTCCTGCACGTCTGTGCCTTTATAATTGTCACTATCCTTCTGGCCCTGGTGTAGAACAGCAATTCTCAAGTGATGTCCTGCTCTGGTAGAAGGATGAACGATGGGGGCTGGAGGACACTTCTGACCATACCACCAATGCCTGAAATAACCCTCAGCCAAACGGGCACAGCAGCAGGCACCGGGCTGAAGCGCAGTCAGCTTCGAAGGGTCTCAGTTGTTCAGACCAGGGCTCACGTGTGCTCCATCCTGTCCATATGTCTTCTGGGTCTGCCTCATTGGCTTTGGGTGCTGGGGGAGTTCTGTAGGCTGCTCACTTAATTGAGCTGTGCCTTCCTGGATCATTCAAGGCTTGAAGTAGCTGCTCGCTCCCGGTTTCAGTGCAGGAGAGTGTTGGCCTAAGAGGACTGAGAATTCTATTGAGGCCAACCAGAGTATGACTCAGTGTTCTGGCACTGGCCTCTCACCTCAGCACTCAGGAGGCAGAGACAGGAGGATCATGGGAGTTCCAGGTCAGCCAGAGCTACATAAGATCCTGTCTGAGGAGGCTGGCTGTTGGAAGAAGCTCTCACATTAGTGCCTGTATGTCAGATTTAGTCACAAATCTCGGTCTTCGGAGCTCTGTGCCCTACAAGGCGGGGTTGGGGTGGGGTGGGGTAAGGGTGTTCCATCAACTCGTCTTTTCAGTTGGTGGTCACTGCAGTGGAAAGGAACTTACAGGCTCCTGTCTTCCCAGACTGCTTGTCCCCCATTGATGCCCTGACTCTTGCCTCCCTTCCTTGTCAG
Seq C2 exon
CCCTCCCTGTGCAGGGCGCCGCCAGTGACTCATGGAGGACAGCTGTCACTGCCTTCAGCAGTACTGAGCCTGGCACCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
-Bat2l:NM_001159634:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAAAGGTCGGGGCCT
R:
CTGAGGTGCCAGGCTCAGTA
Band lengths:
216-1557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: