BtaINT0118607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101630393-101632093:+
Coord C1 exon
chr11:101630393-101630534
Coord A exon
chr11:101630535-101632010
Coord C2 exon
chr11:101632011-101632093
Length
1476 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
3' ss Seq
TCTGTCTTCCTCCTCGGCAGCCC
3' ss Score
8.46
Exon sequences
Seq C1 exon
GTTCCTGTCAAAGGCCGAAGTCTCTCCTCTCGAATTCCTCCTCGGTTTGCAAAGAAGCAGAACAACCTGTGCCTGGAGCAGGGTGATGGGCCTGTGCCCGGCAGCAGCCTGGGCACCGAGATCTGGGAGAGCGGCAGCCAGG
Seq A exon
GTAGGAGCTTGTGTTTGGACCCCGAGGCTCGGGCCGCCTCCCAGGCTTGGGGCCCTTCTCAGGGAGGATTCTGCCCTGGGGCCACGAGCACAGGCACAGCACTGACTGTCTCCTGGCTTCCTCTGCCGAGTCTGCGGTAAAGCCTTCTGAGCACCACGTGCCACTGCAGCCTCTGAGCAGATGTAAGAGTCTCCCTGCCTGAAGCATGGTGGCGAGCAGAGCATTCTGCATCCAGTGACGGGAGTGGGCCCCACCTCGCCTGGCTGAGGTCGCCCGGGAGTTGGTTTGACTGTTGCCCATGTCAGTTATCCTTCCTTCTTACTTGAGGGAGAGCAGTAGACAACTATTTGGAGAACAGGAGTCCATAGCTTTCCCATCCGTGCTGTGTGCCCTTTCCTTGCCAGAAGGAGGTTTCTGTCAACTCCTCCCCAAATGCTGTCTTAGACTTGAAACCAGACTAGGGTGGCCCTTAATTTATAGAAAATCTGTTTCCCTGAAGTTAAAAGAATTTCCTATCCAGTGGTATTTTTCTGGTAATCTTTCATTTTAAAATACAAAACCATATAAGCAGATTGTTCTTGAGTTCCTGCTCTGGGCAAGGCCCTGCAGGCCGGGCAGCGGGAACTGGTGGGATCACCATTGCTAGCTCTTTATTCAGAGCAGCCAAGGCTTCCAGAGCCACGTGACAGACACCCAAGAGCCTGGGTTCTGAGCCTGATGCTCTTAATTTTACCACACGGCCTGTCGTCATGCTTGATTAAAACCTTGAGTGTAACACATTTCCACGTAATAATGGGAAATTGTCAACTCTGACTGAAAGTAAAATAGCCTTTTAGTAAATTTTGGTATCAGTCAGTTTGGTTTTGTGAGAGTGGTGGGTGTCGCAGCGTAAATGTCCAAAAACACGTACCTCCCAGGTTGGTCAAGCAGGGCGGACCAACTCAGGTCGCCCTTGGCTATCAAGGCTTTCCCTCCTGGCTTGTGCAGTGTCTTGTGGTTGCTCAGACCAGGGATGTGTGGATGGCTTCAGAAGGGCCCTGGGTCTTGGGAAAGAGCTTGGGAGGTTTTGTGCACACAGACAGGATCTGTGACTTTTGTTGGATTCTTAAGAATGATTGAGCTAACAACAGTTGAGTAATAATCAGCTTGACTCGTTCAAAGACTTGTAGAGAGATGCCAATTTGTAGAAATAAATAGTTGGCTTTTGTGAAAAAAGCTTTACCACAGCAGAGGTAGTGATACAGAGTTCTAATCCCTATGAGTGAGAAGTTGCTGGTGTGTTTACCTGGAGCTCATCGTCCATGAAATCTCGGGAACCTCGTTTATGGAGATGTTTCTGGGGATGTTGGGAAGTTGAGTGAAGGTGTCAGACTGAGGAGGGAGGTGGCTTGGAGAGTTTGTGTGCGCTGCCTGTGGTCGTGTTTCTGGCTTGGTGGTCCCTCTTTGATGTCCTGACTCTGTCTTCCTCCTCGGCAG
Seq C2 exon
CCCTCCCCCTTCAGGCCTCGACCAGTGACTCCTGGACCAAAGCTGCCACTGCCTTCACCAGCGCTGAGCCTGGCTCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400:ENSBTAT00000010939:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGTCAAAGGCCGAAGT
R:
CAGGCTCAGCGCTGGTGAA
Band lengths:
214-1690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development