GgaINT1022708 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6204878-6206217:+
Coord C1 exon
chr17:6204878-6205019
Coord A exon
chr17:6205020-6206134
Coord C2 exon
chr17:6206135-6206217
Length
1115 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACCCCTGCGTTTTCTTCCAGCTC
3' ss Score
10.15
Exon sequences
Seq C1 exon
GCACCAGCTAAGGCCCGTGTTCTTCAATCTCGCATTCCTCCTCGATTTGCTAAGAAGCAGAACAGCTTGTGCTTGGAGCAAAGTGATGTAACTGTGTCTGGAAACAGCCTGGGCACAGAAATCTGGGAGAGCAACAGCCCAG
Seq A exon
GTAAGTTTGGGAGTGTTTGGTTTGGAGTATTTAACACAAGCAGGGTGTACATGTTTAAGAGGAGACTTTCTTTTTTCTGATGATGTAAATGGAATGGGTGCTAGCAGACTTCCAGAGTGAATCAGAATCACCAAGGTGATACCTCCAAGATCATCTCATCCAACCATCCACCTACCACCAATATTTACCCAATAAACAATATCCGGTAGTACAACATGTAAACATTTGCTGTACACCTCCAGGGATGGTGATTCTACCACCTCACTAGGCAGCCCATTCCAGCACGCCTGACCATTCTTCCTGAGAATAAATTTTTCCTCATATCCAACCTGAACCTCCCCTGGTGCAACTTGAGACCATTCCTGTATTGCTATTTACATGGGAGCAGAGGTTGACCCCTGCCGCACCACAACCGCCTTTCAGGTAGTTGTAGAAAGCTCTAAGGTCTCCCCTGAGACTCCTGCAAACTAAACAATCCCAGTTTCCTCAGCTGCTGCTCCTTGTAAGGCTTGTGCTCCAGACCATTCACTGGCTTTGTTCCCCTTCTGTGGTGGTGCTCCAGGGCCTTGATGTCTGTCTTGTAGTGAGGGGCTGAAAACTGAATGCAGTACTTGAGGTGCAACCTCACCAGGACTTGAGTACAGGGCAGCAATCACCTCCCTGTTCTTCTCTGTTCAGAACTGTACTGTTAAGCTATCCATCTCCTCTTGTTGGCTATGTCAGTCTCCCAGTCTGTTTTCTGGGTCTTTTTGTAAGATTAAGGTCCTAGCATTTTCTAGGCTTGGTGGCCTTGATCTCTTCAGCCACCTTCTTATTTTCCTTTCCTCTTATCCTTTAGCACTTAATAGGTAGTGCCTGCATTGTTACCCTTTCTCTTTCCTATTGCTCTCACATTCCTGAAGAATTTCTTTCCTCTGTTGTCTATCCTCAACTCTCTACAGCATATCTTCTCTGTCCATCTCAGCTGACAGGGGAGCAATAACTTTTTGAGGTAGTGAAAATATCCTTTCTTAAATCTAGAAATGAAATGTTACTTTTGCAACATGCACAGTGCACACGATGTGCTCACAGTTCTGTTTAAAGCAACTGAACTCTACCCCTGCGTTTTCTTCCAG
Seq C2 exon
CTCTTTCAGTTCAGTCTCCTGGAAGTGATTCCTGGAGCAAGCCTGTAAATACCTTCAATGGTACTGAATCTAGTTCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTAAGGCCCGTGTTCTT
R:
CTCAGTGGAACTAGATTCAGTACCA
Band lengths:
222-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]