RnoINT0118604 @ rn6
Intron Retention
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11235404-11237020:+
Coord C1 exon
chr3:11235404-11235539
Coord A exon
chr3:11235540-11236937
Coord C2 exon
chr3:11236938-11237020
Length
1398 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCCCTCCCTTCCTTGGCAGCCC
3' ss Score
10.21
Exon sequences
Seq C1 exon
GTCAAAGGTCGAGGCCTTTCCTCACGGATTCCTCCTCGCTTTGCTAAAAAGCAGAATGGCCTGTGTCTGGAGCAAGGAGACGTGGCCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTGGGAGAGCAGCAGCCAAG
Seq A exon
GTGAGGTGGGTGCCTGGCTCAGTAGAGGTGGGGTGCCTTCTGAGACCCCCACCCTTGAGCCGTCAGTCTAAGTGAGCCATTGCCTATTTCTAGGACTCCAGGCAGAGTCAGTGCTGAGTGGCACCTGAGCTGACTTGTGTGGCAGGCACAGATGGGCGATGCATCCCTGGTTTCCGTACGACTCCAGTAGACTAGCAGAGCCTCTGTACGCCTGCCACCCCGGGGAGGCATCCTGTTTCTTTATCTAGTGGAAGATTGACAGATGGCCAGTAGGGAGTAGGGGGCCCCTTCCCAGACATAGAGAAAGCCCTGTGAATCCCCCCTGCTGATTCCTGTGGAAAGAGAAAGCTCAGACTGACAGGGTTGTACCTTCCTCCACCTTCCTTCTTACATTTTTATTTCCTTAAAGCTTTTCCGTTAGTTTTTAATGCCCCACTCAGAGCTGTGCTTCTGGTAAACTTTTACTTTAAAACATAAAGCCACTCCAATTGATCAGGTTCTTCTTGAAGGCCTGCAGTGAGCGGGGCCTGCACAACAGTGCACCCAGAAGATCATACAGTTGCCTGGAGTTTCTGTAATTTGTAAGGGAGCTGGGAGATTCCACCCTGCAGAACGGTGGCTGAGTCCAGGTTAGAGCGAATGCTACCATGGATGACTCGGGTTCCTACAAATCGGTGTCTTTATAGTTGTCACTCATCTTCTGGTCCTGATGCAGAACAGCTCTTCTCAGTGACATTCTGCTGCTGGAGGATACTTGTTTACCTGCTGCCAGTGTATGGCAGCCAACTTGCCACCATTGCCTGAAACACCCATAGCCAAATGGGCAGGCCACACGCACCAGACTGAGTGCAGCGCAGAAGTCTTCCAGGGGTCAGCGCTTCTGCAGGGTCTCAGTTGTTCAGACCACGGCCTGTGTGCTTCATCCTGTGCATGTGTTTTTCTGGGCTCTGGCTCGTGGGCTTTGGATGCTAGGAAAGGTTTGCAGGCGGCTCACAGAGTTGAGCTCTACCTCCCTGCATCGTTCAAGGCCTTGAAGTAGCCGTAGGAGAGTGTCAGCATAGCTGGACTCAGAATTGAAGTGGGACAGACCAGAGTGTGGCTGAGCATCCTGGCACACTCCTCTAACCTCAGCACTCGGGAGGCAGAGGCTGGAGGATCTCGTGAGCTCCCGGTTAGGCAGAGCTGTGTGAGGAGGTTGGTTGTTGAGAGAAGCTCTTGCATTAGTGCCTTTGCGTCCGATTCATTCGCAAAGCTCGTTCGTCTGCAGGGGTTGGGGGGGGGGGCAGTGGTGTTCTGTTAACTCGTTTTTAGTCGCTGTTCACTCTGATGGAAAGGAAGTCACAAGCTTCCTGTCCCCCGTTGATACCCTGACTCTTGCCTCCCTCCCTTCCTTGGCAG
Seq C2 exon
CCCTCCCTGTGCAGGGCGCCGCCAGCGACTCTTGGAGGACAGCTGTCACTGCCTTCAGCAGTGCTGAGCCTGGCACCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217:ENSRNOT00000013546:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTCCTCACGGATTCCTC
R:
CTCTGAGGTGCCAGGCTCAG
Band lengths:
206-1604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]