GgaINT0123936 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6839884-6841276:+
Coord C1 exon
chr17:6839884-6840124
Coord A exon
chr17:6840125-6841099
Coord C2 exon
chr17:6841100-6841276
Length
975 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
TACATGTCCTTCTCACATAGCTA
3' ss Score
6.31
Exon sequences
Seq C1 exon
GTCTCAGGTGTATATGCACCCCAGTCTATCTCAGCCCAGCACCATGGTCCTGACAGGAGGCACTGCTCTAAAGCCTCCATATTCCGCCTTCCCAGGCATGCAGCCCTTGGAGGTGGTGAAAACCCAGTCTGGATCTCCCTATCAGCCCTTGAATGGAAGCCAGACGCTGGTTTATGAAGGCCAGATAAACCAAGCAGCTGGTATGGGAGCCTCCCAGATGATGGACTCTCAGCTTACACAG
Seq A exon
GTTAGGAGCAGGGCTTGCAAGGCACTCTTGTGTGGAGCATCACTTGTTTCTGTGACTGGGTTGAAACTGATAGTTGTGTGAAATTGTTTGTGTGAGCTAAGTTCATTTTAAAGAGGTAAAAGATTTTTCCATGATCTGTTGCTTCAAAAATGTAGCACCTTATTTAATGAGATTCTTACTAATTACTTGTACGTCCCTACTGCGATGACCTTTTACATTGAGAGATGTCCTCACCCTCCAGGCAGACATTTTGTGCAGAATCAAACCGTGCAGTACTTCCCAAGTAGAGGGCTCTGATGTGGTAGTTGTCCTAAAAGTACTACTTCCAAGAGCCAACAGGGTAAATTCAGCCTTAGATTTTTATTATTTTTATCCCAAAGTGATGTCATGGTACCTCCCAAATTCAGCAGTTGTGAGTACTGCCAGATAAATCAGAACAAACAGGAGGTTGTTGAGTCATGAGCTGCTTCTTGTAAGTACTCTTTAATTATTACTATAATCAATTTGAAATTCATCGTAGAAGATAGATAACCATTGCTTTCTCTGGAAATGCTTTGGTGTGAAAGTAGAGCAGACTTCCTGGCTTGGGTATTAAAGCTGAAAACAGAGTGTCTGATGCTGTCAGAGCTGTCTGACACTGCTGTTAGATCAAGAGAAAAATCACACATGTAGAGATGAGGAGGAAGATTGAAAAACTGGATGATGGTTCTATGTAAGGAGGAAAGTGCTGTTATGTTAAACTGATGCTGTGTTAAAAACCCAGCTGGCAGGGTGTTGGCTGTGCTACGAGCACATGATTTCCAGTGTGAAATTTCCTCTGATACATTAATTTACATTTACCTTTTGCAAGACTGCACTACTTTTCAGATTCTTTGTAGCAATACTGTGTTTTCAGGATGTTAGGAGAGAGCATCTCAGCCCAACACAGTAAACACTGCTCCTGCCTTTAAGTAACTACATGTCCTTCTCACATAG
Seq C2 exon
CTAACAATGCCTGTGCCTGGCTCCCAGCTTCCGCTGCCTCGCTATGGCTCTGGCCAGCAGCCCCTGATTCTGCCACAGTCCATCCAGCTTCCTCAAGGGCAAAACCTGTCTGTAGGAGCTCCCCGAAGAATTCTTCCTCCTGGGTCACAGCCTTCAGTTCTTGCTGCCAGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.873
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATCTCAGCCCAGCACCAT
R:
TTCTTCGGGGAGCTCCTACAG
Band lengths:
347-1322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]