HsaINT0016687 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131487856-131491580:+
Coord C1 exon
chr9:131487856-131488096
Coord A exon
chr9:131488097-131491424
Coord C2 exon
chr9:131491425-131491580
Length
3328 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CTGTCATTGTCGCCCAGCAGCTG
3' ss Score
5.81
Exon sequences
Seq C1 exon
ATCTCAGGTGTACATGCACCCCAGCCTGTCACCGCCCAGCACCATGATCCTCTCTGGGGGCACAGCCTTGAAGCCTCCATACTCGGCGTTCCCAGGCATGCAGCCCTTGGAGATGGTGAAGCCGCAGTCTGGCTCACCCTACCAGCCCATGAGCGGGAACCAAGCCCTGGTCTACGAGGGCCAGCTCAGCCAGGCTGCTGGCCTGGGTGCCTCCCAGATGTTGGACTCCCAGCTCCCACAG
Seq A exon
GTCAGGAATTCAGTCACTCTACCCAAAGCCCTAGGCTTCTTTCCTTCACGACCTTGCCTTTTCTTTTCACCCGCCTCTCAGTGTGTGCTGGCCTATCGTGCTGTTGGTTGGTAGCCACCGTGCCCATTCCTCAGCGTGCAGGAAATCAGCCTCTTCTGAGTAGCCCCATCACCTTTTTTTTTTTTTGGACAGAGTCTCGCTCTGTTGCCTAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTACAACCTCTGTCTCCCACATTCAGGCGATGCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAAGTGTGTGCCACTGTGCCTGGCTAATTTTTGTATTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACCCCTGACCTCAAAGTGATCTGCCCGCCTTGGCCTCCCAAAGGGCTGGGATGACAGGCGTGAGCCACCACCCCTGGCCCCTCATCCATCTCTTTATTCTTGAGACCTGGCTGTCCCCTAAGCACTGCCTGCTCCTGCAGCCCCCAGACGGGGGCTCCTTCCTTTCTCCCTGCCCTTGTGCAGTAGGGTGTGGAATGGGTTAAGAGTCCTCTTTGTGTAGTTGTTGATGCTTCTAGACTCCTCTTCTTCCTTCCTCCCTGAAACGCCAGCTTTGAAGCCCACACCATAGACTGTGCCTGACAAGCCCTTCACTCTGCTATGGTGCCATCACCACATCCAGTGTCTGCTGAGAAATCTTCCTCTCCGTCAACCTGTGGGCAGTATTTGGCACCTTTGAAGGTCACCCTCCTTGTCTGGTCTGGCTTGCAGTCTGTCTCCACTCTCCTGTTCCAGTTCCTAGTGGTTTTGATGTCTGCAGAGATGACCCCGGGTCTCTGTGCCATGGACCCTGTCCATGCAGTTTGTGCCCTCCTCGCCACTGGTGCCCTTGTTCACATGGGCCCCTGCTCTGTGCACTCCTGTCTAGGCTTGGCTGCTCCCAGTAGCTGTGGCTCTCGCATAATCTCAACTCTCAGTGTCCCTCTCAGTTGTCACCTCTGGCTTTTTCAATTCACTCCCTCTAGTGACCCAACTCCAAAATTCTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTCTGTCTCCTGGGTTCAAGCAATTATCGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCACCACCCACCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGGTTTCACCATGTCAGGCTGATCTCGAACTGCTGACCTCAGTGAGCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTTAGCCACCACACCCAGTCTCTGCCACCCATGTTTTTGTCATCCTCCCCCTTGGCCTGGCTTCTTCCTCCCCATCAGCAGATCTGCCGAGCCACATGGCCTTTGCATTTCATCCAAGCTGTGGCTCCCAGTCAACCCCCACCCTCCTAGCAGCTTTTCAGACTTGCATCTTGCCCCTCGCTGCCTCCCACCCATGACCTCCCTTTCTGTGTCACCCAGGAAACAGGAGCAGTGACAGTCTCCAAGCCCCTGTGGCCACATCCCTGCCTAGGTGCTGCCTGTGCCCCTGGGGGGCCCTGCCCCAGCACATCTCCCTCTCTTTCATGCATCAGATATCCCTTCCCGTCAGTACACAGACGAGCTGCAGTGCTGACCCCGTAATCCCGCCCCCCACACCCCTCGAACCACTTTCTTCACCCAGTTTCCAGGCCGTCGCTCCTGGCTTTCCTGCTGCCTCAGGCCTCCTCCTCAGTCTCCTTTGCTGTCCCCTCTCCTTCCCAGTCTGTAATGGTCAGCATGCCCGTGGGCCCTGCTTTGGGTGTGTTTCAAGAGTCATGGCTCTAAATTCCTTCATCTTCTCCTCACTCCCAAATGGACATCTTTAGCTCAGATCTGTCCCTGGAATTGAATCTCAAATCCAATGGACTTTCCAGCATGTCTGCTATGGTGTCTTATGGCATCTCAAGACTCATCATATTCAAAACTCGATTTTCCTCCCGGTCCTTCTGCTTGTCCAGTCCACATCCTCCTTGGCTCCCTGCTCCCCCTCACCTCACCCCCTTACCCTTCAGCAGGCCTGTCAGCTCTGGCTTTAAAAGGATTCAGAATCCAGCTGTGTCTCATCCCCTCCACACCCCTGCATGCTGTCCAGCTCCTGTAGGGACTCCTACCTGGCCTCCCTGCAAGTCAGATCATACCCCAAGTCAGCACTCTATAAATGGCAGCATCTTCCCATCATTTTCATCCTGCACCATTTTGGTGCTCCAAGGAGGAGCATGGTGTTTTGCGGCTCTGGCCACCACAAGTCTCAGTGATGTAATTCCAATAGATCCTTCTGACCCTCCACTGTGGACTCAATAGCAGGGAGATGAAGAGGACAGTGACTGAGAGACCAAAAGTGGCCCAGCCCCCCTACCCCATCCTGTTCCCCTGTCCTTACAGTCTCTGGGCCCACATCCCCACCTCGCATATCTTGTTCTAGTTAGTTAGGCCCTGCAGCTACCCTGTTCTCCTGTCAGCATGCTTCAAAGGACCCCCACAGTCTGGAATCCAGCCCAGTCTTGTTTTTACCACCACTTGATGCAAAACAGTAAGAGTCTTGAACGTGTGTGCTGTACAAAGGAATGCAGAGATATACGTCCGATGCAGCTTTCATCTTTTGGGACTTGGCTTCGCCATTACTTCTGACTTTCCTCACTCGTCCTCTCCTTGCCCACCCCGCCCCGTGTGCACCCATAAATCTGGTGTGCACCCACAGATCCTATGCCGCTCTGCATCCCGAGTGTCCTGCAGCTGTGTCCAGTGTGTGACACACTATCCTGGCAGTGTGCAGGCCCATGTTGGACAGGGCCCTGCCGCTTCCTTGGCACCTTGTATGCTTTCAGTAAGCACTTGCTGGACAAAGGCAGAAAGGGCTGAAGATAGACGCAGCCCTTAGCAGAGATGTGGATGAGACACACTTAACGCTGTTAGTTCCCATGCCTGCAGCCAGCTTAGTCTTGCCCGTTTTCTCACCACCTACTCTATTCCAGCAAGAAGACGTGCCTCTGCCATCGAAGGTGTGAAATCCTGGGCGATCTCTCCTGTGCTGCAGTAGAAATTAGAGCATGTCCTGCTTTATGCAGGCTTTGCTTTAGTTCTTCTGAAGTGTATGAATCTGAAGTGCATGTGCGGTCGCTCTTTGGTGCGTTTGGGGTTTCTCCATAGCATCATTCCCCCTCCTGACTGTCATTGTCGCCCAGCAG
Seq C2 exon
CTGACCATGCCACTGCCTCGGTACGGCTCCGGGCAGCAGCCACTGATCCTGCCCCAGTCTATTCAGCTGCCACCTGGGCAGAGCCTCTCCGTTGGGGCCCCCCGAAGGATTCCTCCGCCCGGGTCCCAGCCGCCAGTCCTGAACACCAGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.599 A=NA C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains