GgaINT1022717 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6212941-6214333:+
Coord C1 exon
chr17:6212941-6213181
Coord A exon
chr17:6213182-6214156
Coord C2 exon
chr17:6214157-6214333
Length
975 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
TACATGTCCTTCTCACATAGCTA
3' ss Score
6.31
Exon sequences
Seq C1 exon
GTCTCAGGTGTATATGCACCCCAGTCTATCTCAGCCCAGCACCATGGTCCTGACAGGAGGCACTGCTCTAAAGCCTCCATATTCCGCCTTCCCAGGCATGCAGCCCTTGGAGGTGGTGAAAACCCAGTCTGGATCTCCCTATCAGCCCTTGAATGGAAGCCAGACGCTGGTTTATGAAGGCCAGATAAACCAAGCAGCTGGTATGGGAGCCTCCCAGATGATGGACTCTCAGCTTACACAG
Seq A exon
GTTAGGAGCAGGGCTTGCAAGGCACTCTTGTGTGGAGCATCACTTGTTTCTGTGACTGGGTTGAAACTGATAGTTGTGTGAAATTGTTTGTGTGAGCTAAGTTCATTTTAAAGAGGTAAAAGATTTTTCCATGATCTGTTGCTTCAAAAATGTAGCACCTTATTTAATGAGATTCTTACTAATTACTTGTACGTCCCTACTGCGATGACCTTTTACATTGAGAGATGTCCTCACCCTCCAGGCAGACATTTTGTGCAGAATCAAACCGTGCAGTACTTCCCAAGTAGAGGGCTCTGATGTGGTAGTTGTCCTAAAAGTACTACTTCCAAGAGCCAACAGGGTAAATTCAGCCTTAGATTTTTATTATTTTTATCCCAAAGTGATGTCATGGTACCTCCCAAATTCAGCAGTTGTGAGTACTGCCAGATAAATCAGAACAAACAGGAGGTTGTTGAGTCATGAGCTGCTTCTTGTAAGTACTCTTTAATTATTACTATAATCAATTTGAAATTCATCGTAGAAGATAGATAACCATTGCTTTCTCTGGAAATGCTTTGGTGTGAAAGTAGAGCAGACTTCCTGGCTTGGGTATTAAAGCTGAAAACAGAGTGTCTGATGCTGTCAGAGCTGTCTGACACTGCTGTTAGATCAAGAGAAAAATCACACATGTAGAGATGAGGAGGAAGATTGAAAAACTGGATGATGGTTCTATGTAAGGAGGAAAGTGCTGTTATGTTAAACTGATGCTGTGTTAAAAACCCAGCTGGCAGGGTGTTGGCTGTGCTACGAGCACATGATTTCCAGTGTGAAATTTCCTCTGATACATTAATTTACATTTACCTTTTGCAAGACTGCACTACTTTTCAGATTCTTTGTAGCAATACTGTGTTTTCAGGATGTTAGGAGAGAGCATCTCAGCCCAACACAGTAAACACTGCTCCTGCCTTTAAGTAACTACATGTCCTTCTCACATAG
Seq C2 exon
CTAACAATGCCTGTGCCTGGCTCCCAGCTTCCGCTGCCTCGCTATGGCTCTGGCCAGCAGCCCCTGATTCTGCCACAGTCCATCCAGCTTCCTCAAGGGCAAAACCTGTCTGTAGGAGCTCCCCGAAGAATTCTTCCTCCTGGGTCACAGCCTTCAGTTCTTGCTGCCAGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.873
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATCTCAGCCCAGCACCAT
R:
TTCTTCGGGGAGCTCCTACAG
Band lengths:
347-1322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]