DreINT0017311 @ danRer10
Intron Retention
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71240772-71242280:-
Coord C1 exon
chr5:71242052-71242280
Coord A exon
chr5:71240937-71242051
Coord C2 exon
chr5:71240772-71240936
Length
1115 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
ATAAATGTGTGTGTTTTCAGGTG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GTCTCAGGTGTACATGCACCCTAACCTGTCCCAGGCGAGCCCCATGGTGCTGTCGGGTGGAGCTGCTCTGAAAGGGCCGTACTCCGCCTTCCCCGGCCTGCAGCCCTCAGACCTGGTCAAATCTCAGTCCGGATCCCACTACCAGCCCATCAACGGCAGCACGCCACTGGTGTACGACCAGCCCACAGGCATGAGCACCTCACAGCTGATGGACTCGCAGCTCATTCAG
Seq A exon
GCAAGATGAAACTCTGTGTGTTATAGGACAGTGTTGTTTATAAACGGTTGGTAAATTTGATCTGTATTGGCCGTCATGTACCGGTTTAAGCTGATCAGGCACTAATCTCTCTACTAATATTAAATACATGTTTTTTAGATGTATTAAACCTGTTGTAGGGGCTTCGGTGCTCTATAATATACACTCACTGGCCACTTTATTAGGTACACCTTACTAGTGCCGGGTTGGACTCCCTTTTGCCTTCAGAACTGCTTTAATCCTTCATGGCAGAGATTCAACAAGCTACTGGAAATATTCCTCAGAGATTTTGCTCCATATTGTCATGATAGCATCACACAGTTGCTGCAGATTTGTCGGCTGCACATCCATGATGCCAATCTCCCGTTCCACCACATCCCAAAGCTGCTCTATTGGATTGAGCTCTGGTGACTGTGGAGGCCATTTGAGTACAGTGAACAGTGATCGCCAGTCTGAGATGATTGAGCTTTATGACATGCTGCGTTATCCTGCTGGAAGTAGCCATCAGAAGATGGAGACACTGTGCTCATAAAGGGATGGACATGGTCAGCAGCAATACTCAGGTAGGCTGTGGCGTTGATGCTCAATTGGTACTAATGGACCCAAAGAAAATCTCCCCCACACCATTACACCACCACCACCAGCCTGAACCGCTGATACAAGGCAGGATGATCCATGCTTTCATGTTGTTGAGGCCAAATTCTGACCCGACCCTAGAGATGGTTGTGCGTGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCAGAGCAGCCCGTCTGGCAGCAACAACCATGCCACGTTCAGTCACTTAAATCCCCTTTCTTCCCCATTCTGATGCTCAGTCTGAACTGCAGCAGATCCTCTTGACCATGTCTACCTGCCTAAATGCAGTGAGCTGCTGCCATGTGATTGGCTGATTAGAAATGTGCCTTAATGAGCAGTTGGACAGGTGTACCTAATAAAGTGGCCAGCAAGTGGATTTAAAACCCCATATTAGCTGCTCTTTATTATGCAAACTGCAGAATCAGATGAACTGGACTCTGCGTGACCATTAAAGAGTTTATTGGCTAACAGATAAATGTGTGTGTTTTCAG
Seq C2 exon
GTGACGATGCCGATGCCAGGCTCTCAGCTGCGCTATGGTTCAGCCCAGCAGCACCTCATCCTCCCGCAGTCCATCCAGCTCCAGCAGAACCAGAATCTGTCTGTGGGAGCTCCACGCCGCATGATGCCCCCAGGGTCACAGCCAGTGCTAAGCGGCAGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639:ENSDART00000112955:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=NA C2=0.855
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACCCTAACCTGTCCCAG
R:
GCATCATGCGGCGTGGAG
Band lengths:
343-1458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]