RnoINT0118614 @ rn6
Intron Retention
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11242189-11244512:+
Coord C1 exon
chr3:11242189-11242429
Coord A exon
chr3:11242430-11244356
Coord C2 exon
chr3:11244357-11244512
Length
1927 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ACTGTCCTGTCACCCAACAGCTA
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTCTCAGGTGTACATGCACCCCAGCCTGTCACCACCCAGCACTATGATCCTCTCTGGGGGCACGGCCTTGAAACCCCCATACTCTGCATTTCCCGGCATACAGCCCTTGGAGATGGTGAAGCCACAATCTGGCTCACCCTACCAGCCCATGAGTGGAAACCAGGCCCTGGTCTATGAGGGCCAACTCGGCCAGGCTGCTGGGCTGGGTGCCTCCCAGATGCTGGACTCCCAGCTCCCACAG
Seq A exon
GTCAGTTTGGTTTCTTGTTAGTCTCCTCCTTCCTTGCCTCTCAGTTGCCTCTTGTGTGCTGATGTTCAAATGTATATCCTAGACACAGAGACTCTTACTAGTCCCACAGCGCCATGTTCTCCTGGCTTCCCCTTCCTCTAGAGCTCTGGTCTAGAGATGTCTGCACTGAAATGGTGTTTGTGGGACTGGAAATGGGGCAGGTGTCATATTTGTTCCTCTATCCCTAGTCCTCACTTCAGAACCTGAGTCAGAGTTACCTGGGCCTGCCCTCTCTGCATATTGGAGCTTTCCCCTGCTGAATTGTACCTCCCTCCTGTGTGGCACCTGAGGGCCTGTCGCTCTTTCTCCATCAGGATGCCCTTGTCCATGCCCGTGTGTAAGGATCATGTGTGGTCCCCAGCTCTGCCTATCTACCTGATAATTCTCAGTGCTCTAAGCACTCTGACCCCAGGCTACTCCCGGACCTGCCCCTCTCACAACCCCCGGGAGTACACCCACAGAGCCGTGCACGCACTCTGTCTCCATCAGTCCTATGTCCTAGGGGTCACTTCCTGATGCTTCCCCCATGCTGTACTGTCCTCCGTCCCCCTGACTGCTTGCTTCCTATCCCTCAAATACCCCTTGTCCAGCAGGCCACCTAGTGGTATCCTTCTCTGTCTTTTCCGTGTAGAGGGAGGCTCACTGTTGACCTCTTCACTGAGGAGTTTTCTTTAGAGCCCACCCTCAGCCACCCCATCACAGCATCACCCACTTGCTTTGGACTCCTAAAATCATCTTCAAGACATTTTCCCTGGCTCTCCTGTCTCCTTACACCCTTTTCCTTCCTTCCTTCCTCCCTTCCTTCCTTCCTCCTTCCTTCCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTGTCCCCATCTAATTGTGGGTGCGCCCTTCATTCCTGTCTTTGCATTCCTTCCTGGTCACTGTCATCCAAGCACTGCTCTTTGCCAGGTTTAACCGTGGGTCCCCTGTGGCTGCCCAGCATCGCCACTTTGTATCTCATGGCAGCTCCAGCATGCTGCCTCCAAGGCCTGGTTTCCCTCCAGTCCTGCTCATCTGAGCTGCAGTACTCCATCCTGCTGTTCCCACCCCTCTGGCCCTTCAGTGGCTCCTGTCACACGCACACGCTCACGCACACATGCACTCATACACACACCCATCCTTACTACCCTGCCCCGGGCCGTGCCGGATCTGCAGAGCCTTACTCTTTGCTCTGCTTTTGCCCTTGGTTCTCAGTACCCTGTGCAATCAGCAGCCCAGCCAGGCTGTCTCCTGCTGGGCATCGTCCTTGCTTATCTTTACTCTGTCCCAGCTGCGCTCTGCTCTGAGGTCCTGGTGTCACTATAAGTCTCAGTGATGTGGTTCCAATAGATCCTTCTGACCCTCCACTGTGGACTCAAAGCAGGGAGATGAAGAGGACAGCGACTGAGAGACCCAAGTGGCCCAGCTCTGCCCAGTGCTTATCCTCCTCCTCAGGCTTGTTCTGAACTTGGGACATGATCTTTTGTGCCCCGTGGGCTGTGTGTTCTGTCTGGCATCCTCCACAAGGCTCCAGTTATCTTTCTTTTCTGCCATCATTGATTCAAAGATCTGTGGTTCCCATCTCTGTGAGGCCAGGCTTCCTGTGCAGCTGTTGTGTGGGGAAGCTCTCTGCCGCATTCAGCTGTGTGCAGCATGTCACATACATTGCCCTGTCGGTGTCACTGCGTATGCCTGACAGTGCCCTGTCCCTTCTCCAGCACCCTTCGTTTAGTGAAAACTTGAACGCCTGAGGACACAGCCTCCTGCAGGTGCAGAGGCCACTCAGGAGTGTTGCATCCCCTCCCAGATGCATGTTTTAGCTTTCTCCCCAGTGTCCCTTCTGTCTCCTGACTGTCCTGTCACCCAACAG
Seq C2 exon
CTAACTATGCCACTGCCTCGGTATGGCTCCGGGCAGCAGCCACTGATCCTGCCACAGTCCATTCAGCTGCCTCCAGGACAGAGTCTCTCCGTTGGAGCCCCCCGGAGGATTCCTCCACCTGGCTCCCAACCACCAGTCCTGAACACCAGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217:ENSRNOT00000013546:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.504 A=NA C2=0.988
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGATCCTCTCTGGGGGCAC
R:
GTGTTCAGGACTGGTGGTTGG
Band lengths:
345-2272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]