GgaINT0123968 @ galGal4
Intron Retention
Gene
ENSGALG00000002682 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr17:7173128-7175689:-
Coord C1 exon
chr17:7175373-7175689
Coord A exon
chr17:7173266-7175372
Coord C2 exon
chr17:7173128-7173265
Length
2107 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
CTTTCCTGTTTCTCCAACAGGAT
3' ss Score
13.08
Exon sequences
Seq C1 exon
GTTGCATGGTTGGACCCTGGAAATGGGATGTCAGTCCCATTCAGGGAGCATAAAGGAAGAAGGAGAATCTCCCAGTTGCTGCTGCTGTGACAGCGAGTGAGAGCACGAGCAGGAAGATGTCGACAGTCACTTCAGCAATTCAGGCTCCTCAGGGCCCTGTGAATCCACCACCTCCGGAGGTCACTAATCCTAATAAGCCTGGCCGGAAGACCAACCAATTGCAATATATGCAAAATGTTGTTGTAAAGACCTTATGGAAGCATCAGTTTGCTTGGCCTTTCTACCAACCTGTTGATGCAATTAAATTGAATTTACCG
Seq A exon
GTACGTATCTATCATCCTCTCTGTATTGTGTTCTTGGAAAGCTGTGTGTTAATTAGATCAGTTTTCTGATCATTGGTTAAAAATGGTTAGATTGCTTTTGGTGATTACCTTGAGTATTCTCAGACTCATCCAACCTAAAGATTGTTTTTCAGAGCTGGAGAGATATAGGTTTCTGAAGGAGAAAACCACTCCCTCACTTAGTAAGGGAGGAGAGCAATGCACAGGCAGGCTGCCTTAGAGCAACTGAAGCACAGTGCTTCATCTCTGGCTTATCTGTGCTTACTATTGCATCTCTTCAGACCTTGTCCCACTTCTGTCCAATCTGAGTGACAGACTGAAAGCCCAAGCTCTGCTGCCTGTGCTCTATGGTGCATTTGACCGGGCTCAGTGTCGTTAGTATTTCCTCTAGACTTTCTTCTGTTGACTTTGGTGTTGAGGGAGGTGCTAATACTTTGGAGCAAGATAGTTTCAAATGCCATACTGGAATTACAAAGAACAGAACAGTTACATTTATCTATTTGCCTCCTGTACTTAGTTATGTATATCCTGTCTCTGTCTGACTAGAGAGTACGAGACAACCAGGTTATTCATGAACGAACAAAGTTTTCTAATAAGCTTTCTTCCAGTGAACAGAACCACTCAACTTTGAAGAGGTAAAAGTGGTCCTGTGGATGTAAAAATCTCAGCAGTGGAGGCAAGCCCCTACCCACCTGTCAAATTAAACACAGAGCCCCCCCATCTGCCCTGCTGTCTGTTCCTCCAGGCAGGCCTTTGCAAATTTATTCTGACTGCTTTGAACAGGAGGATTGCATGTAGGATTCAAGGGAGCAAGGCTGTGGGATGTGAGGTCTGCAGAGCTCCAGTTACCGCAGGTTATGACCTGATTTTATGGACTGGGTCAGGAGTCTTTTGAACTCGGTAATCTTGTTGATGGGTACTATTTAAAGTGCTAGGCAAAAGAGTGAAACACTTAACACGTGTATAATATTTCACTAGGTCTTTGCTCTTTTGTGTTGTCTTTCTGTGGATTTTGTTTCTCAGTGAGGCATTTTGAAGTGGTTTTAGGGCAGGTTACCGGAAAATTTGAAGGAGGAGTCAGTTGGAAGAATAATTGTTTTTCACATGTGGTCTAAATCAGATCTGCACAAGCCCAGTAACCAGCAGGATTGCCTTTTCTGTCCTAGTGTGCCTTGCCTGGAAAAAAGTGGTTTCTCAGGTTGCGCCTGAGAGTGGCCAGGGGCTGTGTGTGGCTTCATGTTCACATGCAGTGAGAGGCACTGCTGCCTCACTTTGGAATGAGAAAATTACAGCATATAACCTCGCGTGCCTAGAGTGTCTCCAGACTAATCACAGCCTCTACAAATGCTTGAGTCCAGCCCAGAGAGAAACTAGGTTAACACATGGAATCCTTTGGAGACCATTTCGAGAGAGTCACTGGAAATTTTAGTTCAGCCTTAGCCAGTGCTGTCACTGCTAAACTTCTGTAAGTGCTGAGTGTTTAAAGGTAGTCTTATAGTAAGGCAGGCAGAAATGCCGTTTCCCAAATTGCTGCCAGTCCCCAGTTAAACTGAACAGCCAGACAAAGTTAGTGCTATCCCTGCTACACCAGCTTCTGGTCCTATGTGAGTGTGAATTGCATCACTGCGGTGTTAGTTGGCTGTGAAGAGTGCCAGCCTTCACCATCTGAAACACCATCTACAGCCTCAGTAAGGGGTATTGAGGCTGCAAACAGCTTAAGGGAGAGGTGCTCAGAAAGCATATTTTCTTCCACATACTGCTTTTACTGCCTTCCCTGTCCAGATGTTCTTATACAAAGCTGGTCATGTCCAAGTAGGCATTTGTATGTGTGTTAGAGTATCTACTGGGGGAGCTGGGAAAAGCTGGCTGTTGTAGAGGGGGTTCTGATGCTTTATAACTAAGTTCGTAATAATGATAGGCTGTGAATTAGGAAATTGAAGTAAAAATGATATTTGCATTTTGCACAAAAAATATGGGGATGTGTGTTTTGGGGAGGGGGTATGAGGAGAAAGCTGGGAGTAGAGTAAGATGTGAGTGCACTTTTTTTCTCATGTCAGGAGATGTAACATCTTTCCTGTTTCTCCAACAG
Seq C2 exon
GATTATCACAAAATAATAAAAAACCCCATGGACATGGGGACTATCAAGAAACGCCTGGAACATAACTATTACTGGAGTGCCAGTGAATGTATGCAGGATTTCAACACCATGTTTACAAATTGTTATATTTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682:ENSGALT00000004226:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=43.3)
A:
NA
C2:
PF0043920=Bromodomain=FE(51.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]