GgaEX0003403 @ galGal4
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr17:7172015-7175689:-
Coord C1 exon
chr17:7175373-7175689
Coord A exon
chr17:7173128-7173265
Coord C2 exon
chr17:7172015-7172162
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTGTTTCTCCAACAGGAT
3' ss Score
13.08
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTTGCATGGTTGGACCCTGGAAATGGGATGTCAGTCCCATTCAGGGAGCATAAAGGAAGAAGGAGAATCTCCCAGTTGCTGCTGCTGTGACAGCGAGTGAGAGCACGAGCAGGAAGATGTCGACAGTCACTTCAGCAATTCAGGCTCCTCAGGGCCCTGTGAATCCACCACCTCCGGAGGTCACTAATCCTAATAAGCCTGGCCGGAAGACCAACCAATTGCAATATATGCAAAATGTTGTTGTAAAGACCTTATGGAAGCATCAGTTTGCTTGGCCTTTCTACCAACCTGTTGATGCAATTAAATTGAATTTACCG
Seq A exon
GATTATCACAAAATAATAAAAAACCCCATGGACATGGGGACTATCAAGAAACGCCTGGAACATAACTATTACTGGAGTGCCAGTGAATGTATGCAGGATTTCAACACCATGTTTACAAATTGTTATATTTATAACAAG
Seq C2 exon
CCCACAGATGACATCGTCCTTATGGCCCAAGCCCTTGAGAAGATATTTCTGCAGAAGGTTGCTCAGATGCCTCAGGAGGAAGTCGAATTATTACCCCCAGTTCCTAAAGGCAAAGGTCGTAAGCCGTCAGTGGGCACACAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682-'7-5,'7-2,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.448 A=0.000 C2=0.460
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=43.3)
A:
PF0043920=Bromodomain=FE(51.7=100)
C2:
PF0043920=Bromodomain=PD(11.5=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATTCAGGCTCCTCAGG
R:
GCATCTGAGCAACCTTCTGCA
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]