BtaEX0005729 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104877897-104880077:-
Coord C1 exon
chr11:104879741-104880077
Coord A exon
chr11:104878541-104878678
Coord C2 exon
chr11:104877897-104878044
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTGACTGTCTTTTTCCTAGGAT
3' ss Score
9.67
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCGCCCTGCAGGTGCTGACCGGTTGGGCCCGGACATGGAATGTCGCGCCTCGGCAGGAAGCACAGAGGAAGCCAGGGCCTCCCTGAGCCGCTGCTGTGACGGCCAGTGAGCGAGCAACTGGAGGATGTCCACCGCGACGCCGGTCGCCCCCACGGGGATCCCGGCGGCCCCGGGCCCGGTGAACCCGCCCCCGCCGGAGGTCTCCAACCCCGCCAAGCCCGGCCGCAAGACCAACCAGCTGCAGTACATGCAGAACGTTGTGGTGAAGACGCTCTGGAAACACCAGTTCGCCTGGCCCTTCTACCAGCCCGTGGACGCCATTAAGCTGAACCTGCCC
Seq A exon
GATTATCACAAGATAATAAAAAACCCCATGGACATGGGAACCATTAAGAAGAGACTAGAAAATAATTATTATTGGAGCGCAAGTGAATGTATGCAGGACTTCAACACCATGTTTACAAATTGTTACATTTATAACAAG
Seq C2 exon
CCCACAGATGACATCGTGCTCATGGCCCAAGCCTTAGAGAAAATTTTTCTGCAGAAAGTGGCTCAGATGCCCCAGGAGGAAGTTGAGTTACTGCCCCCTGCTCCAAAGGGCAAAGGCCGGAAACCCGCTTCGGGAACGCAGAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.000 C2=0.480
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=40.8)
A:
PF0043920=Bromodomain=FE(51.7=100)
C2:
PF0043920=Bromodomain=PD(11.5=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGAGCGAGCAACTGGAG
R:
GAGCACGATGTCATCTGTGGG
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development