RnoEX0015106 @ rn6
Exon Skipping
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:6012152-6014198:-
Coord C1 exon
chr3:6013891-6014198
Coord A exon
chr3:6012994-6013131
Coord C2 exon
chr3:6012152-6012299
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTGAACATCTCTTTCCTAGGAT
3' ss Score
7.93
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGCCTGATTGGGCCCAGAAATGGGATGCCAAGCCTTCCCGAGGAGCGCCTCTTTGAGCTGCTGCTGTGACAGCAAGTGACTAAGCTGCCAGAGGATGTCCACTACTACAGCGGCTGCCCCCACGGGGATCCCGGCAGTCCCGGGCCCCGTGAACCCTCCCCCACCTGAGGTCTCCAACCCCAGCAAGCCCGGCCGAAAGACTAACCAGCTGCAGTACATGCAGAACGTAGTGGTGAAGACACTCTGGAAACATCAGTTTGCCTGGCCTTTCTACCAGCCTGTGGATGCAATCAAGCTGAACCTGCCT
Seq A exon
GATTATCATAAAATAATAAAAAACCCAATGGACATGGGGACTATCAAGAAGAGACTAGAAAATAATTATTATTGGAGTGCCAGTGAGTGTATGCAGGACTTCAACACCATGTTTACAAACTGTTATATTTATAATAAG
Seq C2 exon
CCCACAGATGACATAGTGCTAATGGCCCAGGCCTTAGAGAAAATCTTTCTGCAGAAAGTGGCCCAGATGCCTCAGGAGGAAGTTGAACTATTGCCCCCTGCTCCAAAGGGCAAAGGCCGGAAGCCAGCTGCAGGAGCCCAGAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681-'17-5,'17-4,21-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.493 A=0.000 C2=0.480
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=40.8)
A:
PF0043920=Bromodomain=FE(51.7=100)
C2:
PF0043920=Bromodomain=PD(11.5=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACCTGAGGTCTCCAAC
R:
GCAGGGGGCAATAGTTCAACT
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]