GgaEX0003403 @ galGal3
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
NA
Coordinates
chr17:7854313-7857987:-
Coord C1 exon
chr17:7857671-7857987
Coord A exon
chr17:7855426-7855563
Coord C2 exon
chr17:7854313-7854460
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTGTTTCTCCAACAGGAT
3' ss Score
13.08
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTTGCATGGTTGGACCCTGGAAATGGGATGTCAGTCCCATTCAGGGAGCATAAAGGAAGAAGGAGAATCTCCCAGTTGCTGCTGCTGTGACAGCGAGTGAGAGCACGAGCAGGAAGATGTCGACAGTCACTTCAGCAATTCAGGCTCCTCAGGGCCCTGTGAATCCACCACCTCCGGAGGTCACTAATCCTAATAAGCCTGGCCGGAAGACCAACCAATTGCAATATATGCAAAATGTTGTTGTAAAGACCTTATGGAAGCATCAGTTTGCTTGGCCTTTCTACCAACCTGTTGATGCAATTAAATTGAATTTACCG
Seq A exon
GATTATCACAAAATAATAAAAAACCCCATGGACATGGGGACTATCAAGAAACGCCTGGAACATAACTATTACTGGAGTGCCAGTGAATGTATGCAGGATTTCAACACCATGTTTACAAATTGTTATATTTATAACAAG
Seq C2 exon
CCCACAGATGACATCGTCCTTATGGCCCAAGCCCTTGAGAAGATATTTCTGCAGAAGGTTGCTCAGATGCCTCAGGAGGAAGTCGAATTATTACCCCCAGTTCCTAAAGGCAAAGGTCGTAAGCCGTCAGTGGGCACACAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.448 A=0.000 C2=0.460
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=43.3)
A:
PF0043920=Bromodomain=FE(51.7=100)
C2:
PF0043920=Bromodomain=PD(11.5=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATTCAGGCTCCTCAGG
R:
GCATCTGAGCAACCTTCTGCA
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event