DreEX0017293 @ danRer10
Exon Skipping
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18235741-18236923:-
Coord C1 exon
chr21:18236568-18236923
Coord A exon
chr21:18235967-18236104
Coord C2 exon
chr21:18235741-18235876
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTTTACTTTTTATGTCTAGGAT
3' ss Score
8.62
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGGTTGAAGGTTGGGTCCTGCAATGGGATATGGTCCCTCTCAGATGACTGAAGAGCTAAAAAAACAGAAAAGCATAAAAAAGGCACTCTGAAAATAAGTCTTTTGCAGAATAAAAAAACCTTTCCCATTAAGCAGTTTTTCCCCTCTTCACCAAAATGTCAGCTGTCACTTCCGCAACCCCAGAACCTCCTGCAGCCGCAAACCCTCCTCCTCCAGAGGTGATCAACCCTACCAAACCTGGCCGCAAGACTAACCAATTGCAGTACATGCAAAATGTTGTTGTCAAGACGCTGTGGAAGCACCAGTTTGCATGGCCATTTTACCAGCCAGTTGATGCTGTTAAGCTTGGCCTTCCG
Seq A exon
GATTATCACAAGATCATAAAGAACCCAATGGATATGGGCACCATCAAGAAAAGACTGGAGAGCGTTTACTACTACAGTGCAAGCGAGTGTATGCAGGATTTCAACACAATGTTCACAAACTGTTATATTTACAACAAG
Seq C2 exon
CCAACGGATGATATTGTGTTGATGGCACAAGCGTTAGAGAAGATCTTCCTTCAGAAAGTGGCCCTCATGCCCCAGGAAGAGGTTGAGCTGCTTCCACCTGCCCCGAAGGGCAAAGGGCGCAAACCAGCAGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527-'4-3,'4-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=43.3)
A:
PF0043920=Bromodomain=FE(51.7=100)
C2:
PF0043920=Bromodomain=PD(11.5=21.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACCCTCCTCCTCCAGAG
R:
GGAAGCAGCTCAACCTCTTCC
Band lengths:
254-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]