GgaINT0123995 @ galGal4
Intron Retention
Gene
ENSGALG00000001797 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr17:7957122-7957694:-
Coord C1 exon
chr17:7957559-7957694
Coord A exon
chr17:7957265-7957558
Coord C2 exon
chr17:7957122-7957264
Length
294 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTTGCTCTTCTTCCTTTTAGATA
3' ss Score
11.46
Exon sequences
Seq C1 exon
GACCATTGGGGACCGCATTGGAGAAGCCAAGGCAAGCGGCAACCTTGGGAATACATTGAAAATACTTGGGCAGTTTGATGAAGCTGTCGTTTGTTGCCAGAGACACCTGGACATTTCTCAGGAGCAAGGAGACAAG
Seq A exon
GTAACTGCTTCATGGCATCCAGCAGGAAACGCTTCCTATCCTGAAAATTAATCCACCTCCCAGCCCCAGCAAATGATGACTTGGAGGTGGGCCCTGGTAGGAGCTGGGATGTCAGACTCTCCCTTCTGACTGCATCTGATGCTGCTGATAGGAAAAGCTGGCATGGCAGTGAGGGTGGTAAAGGAGAACGTGGGCTCCCTGCCTTTGGCTGAGCATCTCTGCCCAGCAATTGAAAGAATCATGTTGGGATGGGGAGAGTAATGCCTTGCTGCGCCTTGCTCTTCTTCCTTTTAG
Seq C2 exon
ATAGGTGAAGCCAGAGCGCTCTATAACATAGGAAATGTTTACCATGCGAAGGGAAAGCATTTATCTTGGAACATGGCCCAAGACCCGGGCTACCTGCCTCAAGAAGTCAAGGAGACGCTACAGAAAGCTTCAGAATACTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797:ENSGALT00000002770:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(51.9=87.0)
A:
NA
C2:
PF134241=TPR_12=PU(21.0=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACCGCATTGGAGAAG
R:
AGTATTCTGAAGCTTTCTGTAGCGT
Band lengths:
268-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]