HsaINT0071932 @ hg19
Intron Retention
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:17858]
Coordinates
chr9:139230423-139231529:+
Coord C1 exon
chr9:139230423-139230558
Coord A exon
chr9:139230559-139231377
Coord C2 exon
chr9:139231378-139231529
Length
819 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
ACCCTCCGTACTGCCCACAGGTT
3' ss Score
10.47
Exon sequences
Seq C1 exon
GACCATCGGTGACCGCATGGGGGAGGCCAAGGCCAGTGGAAACCTGGGAAACACACTCAAGGTCCTGGGGCGCTTCGACGAGGCTGCCGTCTGCTGCCAGCGGCATCTGAGCATCGCCCAAGAGCAGGGAGACAAG
Seq A exon
GTGGGGGCTTGGTCCGGGGCTGGGTGTCTCCCACCCCTGCACCGGCCTGCGTCCAGATCCGGGATAGGGGCGGGCGGGTGACTCACCACTCATCCAGCTCCTCATGGGAGGGATGACAGGGAGGTCGGTCCCCTAGATCCCGAGTGACTCAGGAGAGTGTGGGCCCCCAAAACAGGCCCCCCCAGCCCATGCTGACACTGCAGCCCAGGCCCCCACCTTCCACCCTCAGTTCTGCCGCCCCTCTCGGTGACCTCCCCCCGAATCCCTCCACACCCCCAGTCACTCACTCCCTGGGGGGCCCAGCGGGAGGCCGGGGGTGGCTCTGGGCTGCGGCAGTGGGAGGCCGATTTCAATGGCGGTGGTGACAGCAGGAAGAGTGGCTCCGTCTCCGCTTGTGCTGGACCCGAGACAGGCTTTGCTGACCTCCCTCCATGGCCCTGTGAGGCGAGAAAACCAAGGCTGGGGGGACGTGACTTACCCCCCGTCACACAGCTGGAGGTGACCAAGGGGGCTTGAGGCCGCAGCATCTGGTCCCAGCTGGAGCTTTCAGCCTCGGTCATCAGAGGACAGAGCTGAGGACCTGGCACCCTGGCCACGCCAATCCGCAGAGGAGGGAGGGATGGTGAGGGAGGGCGGAGGCTGGCTTCCCGGGTGTGCCGTCCTCAGGCTTCCGCCCCTGCCTTAGTGTCTGTGACTCAGTGGGAGCCCCCAAGGCCCTCGCTGTCGAGGGCTGGGACAGTGAGGACACCGGTGTGCCGGCTCTGCACATCGTGTGGGGGGCCGTGGAGGCATGCCCCCAACCCTCCGTACTGCCCACAG
Seq C2 exon
GTTGGGGAGGCGAGGGCCCTCTACAACATCGGGAACGTGTACCACGCCAAAGGCAAGCAACTGTCCTGGAACGCCGCAAACGCCACGCAGGACCCCGGGCACCTGCCGCCCGATGTCCGAGAGACCCTGTGCAAGGCCTCCGAGTTCTACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360-GPSM1:NM_015597:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(62.3=82.6)
A:
NA
C2:
PF134241=TPR_12=PD(34.4=41.2),PF134241=TPR_12=PU(14.0=15.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCGCATGGGGGAGG
R:
TCGTAGAACTCGGAGGCCTTG
Band lengths:
280-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)