MmuINT0073438 @ mm9
Intron Retention
Gene
ENSMUSG00000026930 | Gpsm1
Description
G-protein signalling modulator 1 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1915089]
Coordinates
chr2:26179028-26179551:+
Coord C1 exon
chr2:26179028-26179163
Coord A exon
chr2:26179164-26179408
Coord C2 exon
chr2:26179409-26179551
Length
245 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TACCTCACTGCTGCCCACAGGTT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GACCATTGGTGACCGCATGGGGGAGGCCAAGGCTAGTGGGAACCTGGGCAACACACTCAAGGTCCTAGGCCGATTCGATGAGGCAATCGTCTGCTGCCAACGACACTTGGACATTGCCCAGGAGCAGGGGGACAAG
Seq A exon
GTAAGTGGTCGGACCCTTGGGTCCTCTACCCTTTCCATCCCTGCTGGGGCTCTTACCCTCAAACGTTATTAGGCCCAGCCACCTCTGCCACCCAGCTGGCAGAGGAGAGAGAGGGAGAGGGTAGAACTGGATCTGCCCTTCCTCGGGACTCAGCAGGCCATGGGACTAGAACACAGCTCCTGCAATCACACCTTGGTGTGAGTTCCCGGGGGGCTGTCGAGCCTCTACCTCACTGCTGCCCACAG
Seq C2 exon
GTTGGGGAGGCGAGAGCACTCTACAACATTGGAAATGTGTACCACGCCAAGGGCAAACAGCTTTCCTGGAATGCTGCACAGGACCCCGGGCACCTGCCACCTGATGTCCGCGAGACACTGCACAGGGCCTCTGAGTTTTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026930-Gpsm1:NM_153410:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.253
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(63.5=87.0)
A:
NA
C2:
PF134241=TPR_12=PD(33.3=43.8),PF134241=TPR_12=PU(18.3=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATTGGTGACCGCATGG
R:
TAAAACTCAGAGGCCCTGTGC
Band lengths:
276-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: